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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, … the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… Rhondene Wint, an alumna of the DOE Joint Genome Institute (JGI)-UC Merced internship program and current PhD student, … and it feels so rewarding,” Wint said. For Axel Visel, JGI Science Deputy and a co-founder of the internship … ecosystem,” said Salamov, one of Wint’s mentors and a data scientist at the JGI. Previous studies were conducted …
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Fishing for Novel Cellulose Degraders
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … can uncover more about cellulose-degrading microbes. The new technique is another tool for microbial ecologists to … reconstruct a high-quality draft co-assembled genome for a new genus level member of the novel candidate phylum …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … DNA floats freely within the cytoplasm of their cells. This newly discovered species of bacteria keeps its DNA more … ,” Gonzalez-Rizzo explained. “This kind of discovery opens new questions about bacterial morphotypes that have never …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Czech Academy of Sciences first needed to build a detailed database on the denizens in the soil. While large protein … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Berkeley National Laboratory, to create the database. JGI provided metagenome and metatranscriptome sequences, as …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in … on every continent besides Europe and Antarctica. A  new analysis takes a  genomic look at Lentinula samples from … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Waiting to Respire
… Communications , two research teams joined forces and data sets to describe bacterial genomes for related … of UC Berkeley geomicrobiologist Jill Banfield, a longtime JGI collaborator, postdoctoral fellow Paula Matheus … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and research …
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The Power of One, Amplified
… of microbial genomes directly from environmental sequence data, by piecing each genome together from large mixtures of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … another might exhibit few limitations to interactions and new connections, thus sharing more ideas, similar to the …
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Steven Wilson
… applications that span the lifecycle of activities at JGI - proposal submission and review, project and work order … of microbial/metagenomic assemblies, portals that make data available to the public, and our institutional website. … align and reach the associated goals. Mr. Wilson joined the JGI in 2002.  A fter supporting the sequencing core at …
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Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
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Tanja Woyke Elected to American Academy of Microbiology
… Congratulations to the JGI’s Tanja Woyke , who has been elected to the American … Academy of Microbiology (AAM) ! She is among the 68 new Fellows in the Class of 2020, selected from 118 … and leading to the discovery of features such as a new genetic code. More recently reported in Nature , she led …
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Tracking the Origins of Methane-Producing Microbes
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the … archaea. The Quake lab had previously collaborated with the JGI on a proposal using this approach through the Emerging … These two things combined led us to conclude that our new methanogen did not belong to the Euryarchaeota, the …
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