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Leo Baumgart
… biology and microfluidics at the University of California, San Diego. As the Sequencing Technology … Lead, he directs a multidisciplinary team responsible for piloting and operationalizing new genomic technologies, … integrating automated liquid handling and bioinformatics pipelines to transition bench-scale methods into …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… surface of plants, is a comparatively understudied area of forest ecosystems as past studies have mainly focused on … land and the atmosphere. Microbes living there can interact with chemical defenses of plants and influence nutrient … composition varied across both sites and host tree species, with geographic site exerting the stronger influence. …
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DAP-seq Drives Robust Mapping of Gene Regulation
… limitations and the sheer complexity of plant genomes. Now, with improvements to DNA Affinity Purification Sequencing … samples in a single experiment — and integrated these data with single-cell gene expression maps. Together, the scale … advancement holds the potential to expand opportunities for bioenergy and bioengineering applications. “We worked …
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Streamlining Regulon Identification in Bacteria
… technology could speed up associating transcription factors with their target genes. The Science Regulons are a group of … technology, which combines an in vitro transcription assay with RNA sequencing, they were able to identify the target … regulation is critical to ensuring genes vital for growth and survival across various environments are …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… For the first time, a team has comprehensively described … inside the host’s genome, living quietly and replicating with their host indefinitely. Now, in studying a microbial … strategy of lysogeny. The ability of the virus to tag along with the host has earned this strategy a riff, developed by …
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Logos and Templates
…  If you have questions or need logos or templates in a format not currently available here, contact Massie Ballon …
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Integrating Experimentation with Data
…   Registration for this meeting has closed           Registration fees:     … $200      Postdocs: $250     Industry: $700    Thanks for joining the Joint Genome Institute (JGI) and the … Automated Laboratories: Integrating Experimentation with Data” was held at the Seattle Marriott Waterfront in …
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Programs & Platform Leads
… of complex biological, earth, and environmental systems for energy and infrastructure security. In complement to … infrastructure of Genomic Technologies and Data Science & Informatics. The JGI also sustains a vibrant community …
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Partners
… as impact multipliers . The JGI has a long-term partnership with the HudsonAlpha Institute for Biotechnology for our Plant Program, and is further … to support plant and other efforts. The JGI works closely with DOE computational facilities (e.g., the National Energy …
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Green Algae Reveal One mRNA Encodes Many Proteins
… research team included scientists at the University of California (UC), Berkeley, UCLA, UC Davis, Brookhaven National … enabled by the “Facilities Integrating Collaborations for User Science” (FICUS) collaborative science initiative … address some of the most pressing challenges of our time. For more information, please visit  …
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Tracking the Origins of Methane-Producing Microbes
… cycle. All methanogenic archaea use one of three pathways for methanogenesis: hydrogen-dependent and CO2-reducing, or … of them archaea. The Quake lab had previously collaborated with the JGI on a proposal using this approach through the … (ETOP). Following that work, they partnered once more with JGI Microbial Program head Tanja Woyke and her Single …
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