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Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements
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Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data
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Combining Hadoop with MPI to Solve Metagenomics Problems that are both Data- and Compute-intensive
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iVirus 2.0: Cyberinfrastructure-supported tools and data to power DNA virus ecology
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Searching for fat tails in CRISPR-Cas systems: Data analysis and mathematical modeling
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GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser
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Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics
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DAP-seq Drives Robust Mapping of Gene Regulation
… yield an unprecedented view of plant evolution and adaptation.    Understanding how genes are regulated is like … Implementation Lead at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … DAP-seq method overcame some of these challenges by using  in vitro -expressed TFs and fragmented genomic DNA, …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving and applying a method that allows researchers to quickly modify diverse bacterial … for our users,” says JGI Director Nigel Mouncey. Using CRAGE, JGI has established a portfolio of microbial …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is published … Rhondene Wint, an alumna of the DOE Joint Genome Institute (JGI)-UC Merced internship program and current PhD student, … a gene sequence-based predictor of gene expression levels using machine learning tools. “This was very exciting to see …
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A Grass Model to Help Improve Giant Miscanthus
… multiple chromosomes of Miscanthus arose by ancient hybridization (polyploidy) and insights into the dynamics of gene … Communications by an international, multi-institutional team. The work was a joint effort led by scientists at the … Biosciences Institute, the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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New and Improved: Eucalyptus Reference is Now Accessible
… compared to the 2014 Eucalyptus grandis reference genome that has been widely adopted. The new genome assembly resolves … The new improved genome assembly generated through the JGI’s Community Science Program will help support targeted … genome assembly and annotation. Genome contiguity of the 2025 phased reference and 2014 diploid genome reference was …
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