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JGI@25: Stories from Intern Alumni
… 25th anniversary . Over the next few months, we’ll be revisiting a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and … organizations. From field research and wet lab experiments, to computational modeling and virtual projects, hear intern …
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Crysten Blaby-Haas
… with Valérie de Crécy-Lagard on using comparative genomics to predict gene function in bacteria and leveraging molecular biology and reverse genetics to test those hypotheses. From 2011 – 2015, she … between the JGI and Molecular Foundry for genome-encoded biomaterial discovery, design, and engineering. … PhD, …
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Forest Fungi, Seagrass, and a New View of Symbiosis
Three stories of JGI-supported research, connected to nutrient cycles. Francis Martin and Lucas Auer discuss their work on communities …
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Streamlining Regulon Identification in Bacteria
… technology could speed up associating transcription factors with their target genes. The Science Regulons are a … factors that initiate transcription in bacteria. Using this technology, which combines an in vitro transcription … complex as well as a sigma factor. While all bacteria encode at least one principal sigma factor responsible for …
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JGIota: Sequencing Shiitakes with David Hibbett
… the kind of decay that makes shiitake mushrooms special. This week, he and 39 collaborators published a paper tracing how these mushrooms have evolved.  …
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Yasuo Yoshikuni
Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science Program since 2015. The mission of this program is to harness the power of DNA synthesis, strain engineering, … and renewable chemicals, developing genome engineering tools for non-model organisms, modulating microbe-microbe …
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Ian Blaby
Since 2019 Dr. Blaby heads the DNA synthesis platform at the Joint Genome Institute, where he leads … design and assembly, strain engineering and bioinformatic tool development/data analysis for synthetic biology and … function. … B.Sc. (HONS) – University of Wales, Cardiff, Genetics Ph.D. – University of Cambridge., Microbial …
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Accelerating Metagenomics Discoveries with Deep Learning
On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley … with 86 participants in an online workshop to harness deep learning for metagenomic data.  Metagenomic …
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Dealing with Drought: Uncovering Sorghum’s Secrets
Over 40 percent of the cereal crop’s genes respond to drought stress. The Science Fields of drooping stalks and … for agricultural products.  Sorghum bicolor (L.) Moench is an African grass that adroitly handles droughts, floods … to produce good yields under water limiting conditions. Epigenetic Control of Drought Response in Sorghum (EPICON) is a …
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I-Min (Amy) Chen
… one of the co-authors and key developers of the Object-Protocol Model (OPM) data management tools for scientific applications developed at Berkeley Lab. Dr. Chen is currently the Microbiome Computational Resource Lead at …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and … DOE works with the National Nuclear Security Administration to maintain the U.S. nuclear weapons stockpile and was …
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Methane Makers in Yosemite’s Lakes
… sampled the microbial communities living in the mountaintop lakes of the Sierra Nevada mountains. These lakes are isolated, but varied. They’re a great way to see how climate change affects freshwater ecosystems, and …
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