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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), Merced. What started with 2 interns in … the JGI’s home at Berkeley Lab, as representatives highlighted the benefits of this collaboration.  JGI Director …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
In honor of the JGI's 25th anniversary in 2022, we have revisited a … green sharpshooter. In 2012, single cells isolated from the microbes found in the oil plume from Deepwater Horizon oil … from the bacteriome of the green sharpshooter Draeculacephala minerva bacteriome, pictured at the bottom.  …
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Finding the Fermenters
… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … the genomes and predict the metabolic abilities of these microbes. The Impact This study illustrates how the research … of fermentative prokaryotes … Narrative for Lachnospiraceae sp. C1.1 genome on KBase … Narrative for …
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JGI at the AGU Fall Meeting
Register for the meeting here. Here are some sessions of interest (all times in PST unless otherwise noted): … Proposal via FICUS December 13 8:12 am Convention Center eLightning Theater IV: Kuno Kasak, University of Tartu … B45F-1604: Joseph Roscioli, Aerodyne Research Inc.: “Subsurface measurements of nitrogen dynamics in agricultural soil” …
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A Collaboration to Improve Plant Genome Annotations Across Species
… which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … out to characterize the transcriptome – the complete set of RNA molecules transcribed from all the genes within a … here in modified format; their conversation has been lightly edited and condensed below. Sarah Sharman:  What is …
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Accelerating Metagenomics Discoveries with Deep Learning
… insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … into multiple interconnected layers. The architecture of these algorithms, inspired by communication networks … for example, a camera’s ability to recognize your face and distinguish it from your friend’s. Biologists aim to …
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Uri Neri
… just "spicy messenger RNA", and that somewhere in the mess of genetic sequences lurks the next cool virus – if only our …
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Refining the Process of Identifying Algae Biotechnology Candidates
… well ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly simple: place these algae in a container with access to sunlight, water and carbon dioxide so they can grow, and then …
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Mindfully Moving JGI
JGI is in the process of shifting its operations from Walnut Creek to the heart of … During those days, they were asked to “KonMari” their spaces, a decluttering method focused on keeping only items … equipment – all of that is being diverted to be reused or recycled. And so that is in part recycling and sustainability. …
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David Goodstein
With a background in experimental and computational surface physics, Dr. Goodstein held positions at Cornell, IBM, … focused on building tools to facilitate expert curation of human gene models in support of JGI’s contributions to the Human Genome Project, he began …
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JGI User Executive Committee Expands
… have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of … of Wisconsin-Madison and a co-investigator in the Great Lakes Bioenergy Research Center. Her research focus is …
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Creating an Energy Market for Miscanthus
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