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JGI announces second round of 2023 New Investigator awardees
… with DOE missions and from PIs who have not led any previously-accepted proposals — through the New Investigator call under our Community Science Program .  Below find a list of the second round of …
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JGI@25: The Little Alga That Could
… production in other algae that may be more viable for sustainable biofuel production. The JGI published a partial … by Daniel Rokhsar, head of the JGI’s Computational Biology Program, along with JGI Computational Scientist Simon … been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference genome is cited …
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JGI@25: From Life at the Extremes to Editing Genomes
… ecosystems around the world, conducting iterative searches using statistical analyses to continuously refine and … and Management.” So begins a passage from Doudna’s book about her meeting with Banfield. (Banfield’s recounting of … doi: 10.1016/j.molcel.2018.12.015. Harrington LB et al. Programmed DNA destruction by miniature CRISPR-Cas14 …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… and applying these engineered ecosystems across various biological contexts. The program fosters intimate, dynamic interactions, offering an …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… microorganisms for biofuel production and other sustainable applications. Summary Hot springs are … A recent study published in  The ISME Journal     focused on a class within  Chloroflexota called  … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, has …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… the genetic codes of plants is often challenging because in many plants chromosomes are present in more than two … his words, the history of the strawberry is complicated because, “when you have comparisons to other closely related … an early algorithm and developing it in order to talk about the subgenome identity.”  These days, Session is …
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JGI@25: Building a Better Bean
… may not seem to amount to much, the common bean (Phaseolus vulgaris) is actually a vital source of protein in many … works on food crops specifically, “[At the JGI] we do use Phaseolus as a test model quite frequently for R&D in … trait. Traditionally beans have had a shelf-life about roughly 6-9 months before their color begins to …
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Honey Bee Gut Microbiota Divvy Up Dinner
… of the National Academy of Sciences . The team focused on the dominant bacterial clades shared between honey … pollen’s pectin and hemicellulose are degraded mainly by just two clades:  Gilliamella,  which mostly resides in the bee’s ileum, a structure analogous to the human small intestine; and  Bifidobacterium,  …
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Accelerating Metagenomics Discoveries with Deep Learning
… workshop, Volkan Sevim, a computational biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), … that low sequence identity may belie. The technology he’s using is magical; transform any length of amino acid sequence into a smaller, constant-length vector using deep learning. Vector representations allow homology …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… Studying the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but … To access the genomes of uncultured  microbes , scientists usually employ two different methods; shotgun metagenomic … and most genomes that were acquired through it were usually only around 30% complete.  Described in  ISME …
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First Monoploid Reference Sequence of Sugarcane
… difficult to sequence and assemble, in turn limiting the use of modern, genomic breeding in these crops. For diploid species, sequencing programs generally focus on a genotype with two identical sets of chromosomes to …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… boggy wetlands produces an estimated 5% of annual greenhouse gas emissions. Understanding how sphagnum, a primary … their role as carbon sources. Summary Sphagnum, a genus of just under 400 mosses that can carry up to 25 times their dry … no. 10.46936/10.25585/60001030) (A.J.S.) conducted by the US Department of Energy (DOE) Joint Genome Institute ( …
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