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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… students this past summer. This year’s cohort for the JGI-UC Merced Internship Program was brimming with excitement and determination as … own perspectives. The interns from this cohort and their JGI mentors are listed below, along with their project focus …
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Matt Blow
Dr. Blow joined the JGI in 2009, and currently heads the User Support Analysis … in human and other vertebrate genomes. When he joined the JGI, he worked as a project scientist and then as a research … and other functional genomics datasets generated by JGI user science projects. … BS in Biochemistry and …
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An Automated Tool for Assessing Virus Data Quality
… uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … tail – they individually decide that the elephant is either dangerous, akin to a carpet, or a harmless piece of rope. … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Green Algae Reveal One mRNA Encodes Many Proteins
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … (FICUS) collaborative science initiative between the JGI and EMSL.  … The U.S. Department of Energy Joint Genome … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Rex Malmstrom
… of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … and carbon consumption of SAR11 bacteria, the most abundant bacterial group in the ocean. Later during his … to culture these microbes in the lab. After joining the JGI, he formed the Microscale Applications group to operate …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… ecosystems across various biological contexts. The program fosters intimate, dynamic interactions, offering an …
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Supercharging SIP in the Fungal Hyphosphere
HT-SIP is a capability available to request through  the JGI proposal calls . … Work at Lawrence Livermore National …
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SIPs with Standards
… catch: SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible … multiple teams and analyses. This episode, Rex Malmstrom (JGI), and Roli Wilhelm (Purdue University), share a few …
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Honey Bee Gut Microbiota Divvy Up Dinner
Bifidobacterium strains, on the other hand, are abundant in glycoside hydrolases, and are thus better adapted … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… multiple viruses in Earth’s deep subsurface. They are abundant representatives of deep subsurface ecosystems. A team … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … 150 archaeal viruses had been previously identified. The JGI researchers surveyed publicly available data in the …
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Adopt-A-Genome
In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the literature. These … available for future research. Hear from Rekha Seshadri (JGI) and Matt Escobar (California State San Marcos) about …
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Uri Neri
… and occasionally remembering to document his code. At JGI, he develops tools for viral discovery and analysis, …
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