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Webinar: PhycoCosm Tutorial
… rate for CSP? What makes a successful CSP? A: Reminder: two calls for proposals are open right now – large scale CSP … devoted to algae (photosynthetic eukaryotes not including plants), so populated by algal genomes thus defined. We also have some reference plant genomes to help with comparative studies of algae and …
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JGI Scientists Pen Genome Watch Articles
… latest article, published January 27, is about engineering plants and their microbiomes for more sustainable … genomics from around the globe through a collaborative network of researchers that we support through our role as a … with  Nature ’s cartoonists, the article comes out — about two months after the first draft. Woyke has so far selected …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… organisms may evolve.  Determining the genetic codes of plants is often challenging because in many plants chromosomes are present in more than two copies, a condition known as polyploidy. The multiple … copies arise from past genome duplication, which occurs in two basic ways. In “autopolyploids”, genome duplication …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… Blow, and their team have also harnessed CRAGE to create a plant-fertilizing microbiome. In work  reported in  Applied … Ralstonia with enzymes that make phosphate bioavailable for plants. When these engineered bacteria were used with the … DNA insertion, the new system, CRAGE-Duet, can accommodate two DNA constructs, doubling the amount of DNA that can be …
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VEGA Symposium
… 18-19, 2026 on the UC Berkeley campus. Organized every two years since 2018, the goal of this symposium is to bring … a mix of plenary talks, panel discussions, posters and networking sessions. Beyond providing an overview of the …
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Training the Next Generation of Talent
… Ben Cole on a project involving bacteria in Arabidopsis plant roots. At the same time, Lawrence worked with Nicole … Science Program collaborators, and UC Merced has many talented graduate students working in genomics and … QSB Graduate Program Chair Ardell . He also noted that the two inaugural JGI-UC Merced Summer Internship Program alumni …
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Open Frameworks Training the Next Generation of Scientists
… services and analysis—to participants. Over the past two years, Myco-Ed has been used in 15 individual classrooms … (Microbiomes In Computational Research Opportunities Network), a National Science Foundation-funded program, for … and peer-support through regional cohorts and a national network. Myco-Ed and MICROnet, in theory, are operating in …
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THE Bioenergy Tree
… trees in the Northern Hemisphere, making them tantalizing plants to harness for bioenergy. In this episode, hear from …
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Rex Malmstrom
… stages of the arbuscular mycorrhizal symbiosis. Nature Plants 10, 673–688 Vyshenska et al. 2023. A standardized …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… and provide opportunities for biologically-based mitigation strategies. “I can say this very confidently,” said JGI …
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Ian Blaby
… approach to reveal the functional links between gene networks. BMC genomics. 20:12. 2019 Anderson et. al., … Exploiting algal NADPH oxidase for biophotovoltaic energy. Plant biotechnology journal . 14: 1, 22-28. 2016 Blaby et. … responses and overlap with other stress transcriptomes. The Plant Journal . 84: 5, 974-988. 2015 Zones et. al., …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… switchgrass is polyploid. This means it contains more than two copies of the genome , which can have pronounced … could be generating these observed patterns. As many other plant species have natural cytotype variation, we also hoped … hundreds of naturally-occurring genotypes (in this case, a plant’s complete genetic makeup) and 10 common gardens. We …
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