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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … of fungi from aquatic to terrestrial habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which … Most of the attention on Olpidium was from agricultural research. Several species of Olpidium are obligate …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” … traits. Given the importance of polyploidy in plants, researchers have sought to learn the origins, evolution and … of plant polyploids. A multi-institutional team led by researchers at Spain’s Universidad de Zaragoza and the U.S. …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… Researchers looked across many organisms to see that … mix-and-match characteristics — creating many different ways of processing nitrogen. To boost crops more efficiently … proteins, as well as recycling nitrogen. Now, with insight into a specific enzyme class that’s important to the way …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… have discovered that the candidate bioenergy feedstock switchgrass has adapted to expand its habitat range. But at what cost?  A collaborative team led by researchers at the University of Texas (UT) at Austin, the … to past climate change will provide unprecedented insight into the mechanisms that perennial grasses have and will use …
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Mapping Heat Resistance in Yeasts
… A new approach for improving functional annotation in fungal genomes. The Science In a proof-of-concept study, researchers demonstrated that a new genetic mapping strategy … members of a given species. These approaches don’t allow researchers to compare across very distant species that no …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free … As reported August 26, 2021, in Nature Communications , researchers led by Hal Alper at The University of Texas at … yeast cells but then moves out of the cell structure into a cell-free system. The work complements efforts to …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  video below, … to academic, government agency, non-profit, and industry researchers worldwide.  Q:  To what extent is natural soil a … data (secondary metabolomics), how can we map it into these networks? A: We use networks based on the …
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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great … , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense collection of publicly accessible …
Learn more
Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free … As  reported August 26, 2021, in  Nature Communications , researchers led by Hal Alper at The University of Texas at … yeast cells but then moves out of the cell structure into a cell-free system. The work complements efforts to …
Learn more
JGI Accepts 17 Proposals for Community Science Program
… Monitoring Inter-Organism Interactions Within Ecosystems Latest portfolio of approved proposals … wildfire.  Eight of the approved proposals are led by researchers, including Nelson and Roth, who have not been a … Ederson Jesus of Embrapa, Brazil’s public agricultural research corporation, is focused on microbial interactions …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that … microbes are no exception. Back in 2011, JGI-supported researchers published a paper in the journal Science. It … vital to facilitate the assembly of small DNA fragments into larger and coherent pieces called contigs — into genes …
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New and Improved: Eucalyptus Reference is Now Accessible
… targeted tree breeding for the bioeconomy.   The Science Researchers report a new reference genome for eucalyptus in the July edition of the … Energy (DOE) Office of Science Biological and Environmental Research program to provide the fundamental science to … The work (proposal: 10.46936/10.25585/60008105, WIP proposal ID: …
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