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… to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes are the …

… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on Microbial Genomics and Metagenomics. Details: mgm.jgi.doe.gov   This … highly hands-on workshop is designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) …

… Altiarchaea are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are … by combining a study of microbial communities (metagenomics) and a chemical labelling approach. The Impact … and dominant populations in oxygen-poor environments without oxygen deep below ground. These archaea fix carbon …

… Researchers at the JGI develop a tool to quickly and accurately identify mobile … at Lawrence Berkeley National Laboratory (Berkeley Lab), with computing resources provided by NERSC, another user … cycles around them. By understanding more about the genomics of MGEs and their evolution at the cellular level, …

… Bagby (Case Western Reserve University) and Simon Roux (JGI) as they talk about their recent work on a time series …

… and the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … the mechanisms through which sorghum is equipped to deal with adverse environmental conditions, researchers hope to … of Drought Response in Sorghum (EPICON) is a five-year, multi-institution project funded by the DOE Office of …

… Back in 2011, JGI-supported researchers published a paper in the journal Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data from … Associate Professor Matthias Hess, also the chair of the JGI User Executive Committee, on how that study went from …

… at the supercomputing that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge National … — Summit and Frontier — that process terabytes of data with MetaHipMer2. And the National Energy Research … Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running …

… microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast majority of … would allow researchers to focus on specific microbes within metagenome samples and associate their sequences with … protocol,  detailed in the journal  Microbiome , combines multiple techniques and was demonstrated using a specific …

… an interactive public database for the research community. With more than 13 million BGCs in the catalog at the time of … repository of BGC sequences that come pre-annotated using multiple commonly used sequence analysis tools is a means of … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… biofuel production. Efforts such as the 1000 Fungal Genomics Project led by the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility of Lawrence … genes and improve functional annotation to harness the genomic data. Reported October 8, 2018, in Nature Genetics , a …

… as well as a faculty affiliate in the Environmental Genomics and Systems Biology Division of Lawrence Berkeley … National Laboratory (Berkeley Lab). He completed this work with collaborators at the University of Wisconsin-Madison as … enzymes in specialized metabolism, organisms tend to evolve multiple copies of enzymes, similar to including half a …