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Olpidium, The Key to the Origin of Terrestrial Fungi
… genetic material of Olpidium. They inoculated cucumber roots with zoospores of Olpidium bornovanus and allowed the … genetic material with various origins, ranging from fungi, plants to bacteria. Back in 2011 when these genome and … fungi predate the oldest known fossil record of land plants and evolved in early microbial biocrust environments. …
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JGI@25: The Little Alga That Could
… evolutionary history. Retaining ancestral features of both plant and animal cells, it shares nearly 7,000 genes with … (a third of those shared by both humans and flowering plants). Its genome also contains hundreds of genes uniquely associated with carbon dioxide capture and the generation of biomass, making …
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Forest Fungi, Seagrass, and a New View of Symbiosis
… floor fungi. Allison Joy looks into seagrass meadows' carbon sequestration with insights from Adam Healey and Xiao … on the symbiotic relationship between mycorrhizal fungi and plant roots.  …
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Promoting the Power of Viral Metagenomics
… the planet’s oceans can exert great influence on earth’s carbon and nitrogen cycles. Currently one of the best ways to … the viruses may be targeting or infecting, how well the targeted organisms are at fending off the infection, and how …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… (KNN) Classification. LDA is a supervised data compression technique that was used to take the complex, …
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Gene Expression: From On-Off Switch to Dial
… these sugars. To demonstrate the versatility of this novel technique, Alper and his team also applied this method to a …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… the Bigelow Laboratory for Ocean Sciences described a novel technique to access high-quality genomic information using … led to the identification of key microbial culprits in carbon fixation in the dark ocean. Combining single cell …
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UC Merced Interns Reflect on Their JGI Summer Projects
… visualization tools, to using natural language processing techniques to categorize genetic information. Learn more …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… to those from fungi when it comes to breaking down tough plant fibers. The Science Walk in a temperate forest filled … to dig into a forest floor ecosystem to discover what carbon- and nitrogen-metabolizing enzymes are abundant, and to … the forest floor: the leaf litter on top of the soil, the roots of the trees, the rhizosphere soil (soil under direct …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… proposal. Guest speaker Michelle O’Malley of UC Santa Barbara talked about how her approved FICUS proposals have … single cell sequencing and mini-metagenomics to more targeted approaches, such as BioOrthogonal Non-Canonical …
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Open Frameworks Training the Next Generation of Scientists
… training program, students receive training in laboratory techniques through hands-on experiments and data analysis. … of instructors training students in microbiome research techniques, including bioinformatics skills, while … Science Foundation Integrative Organismal Systems - Plant Biotic Interactions 2029168 award. This material is …
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How Filamentous Fungi Sense Food
… and decide on the order in which this fungus breaks down plant cell wall materials including lignin, cellulose and … of plant cell walls, which range from simple to complex carbohydrates, and then convert them into simple sugars. More … Academy of Sciences . Researchers applied multiple omics techniques to reconstruct and model the gene regulatory …
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