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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Puerto Nuevo is a small town along the Baja California coastline in Mexico. While conducting early field studies related … patterns of Puerto Nuevo’s coastal waters and sediment with collaborators at the Center for Scientific Research and … much to learn, I certainly feel much more advanced in my understandings than I would be at this stage without the …
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Busting the Unbreakable Lignin
… New evidence shows anaerobic fungi can degrade the hardiest of plant components   The Science There are three main ingredients to tackle when it comes to breaking down a … anaerobic fungi could be used to effectively modify lignin without oxygen and make use of it, it would change the …
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Mapping the Earth’s Hidden Fungal Kingdom
… written in a yet-to-be-deciphered language. Researchers with the Department of Energy (DOE) Joint Genome Institute … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … meaning hidden within millions of genes? Fostering a Deeper Understanding Fortunately, fungi are ideal subjects for …
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JGI@25: Studying Sorghum’s Survival Skills
… biofuels thanks to its drought and flood hardiness. Even with little water, full sunlight and hot temperatures, … However, neither crop shares sorghum’s hardiness, so understanding sorghum’s survival secrets could change not … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… case studies, JGI scientific users share how they’ve worked with the JGI DNA Synthesis Science Program, which started in … (PIs) harnessed JGI’s DNA synthesis capability to better understand a special class of compounds, or secondary … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free environments? … (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have both the machinery to make … can be enabled by this technology, but also what we can understand through this technology.” “This is a fantastic …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… On July 8, JGI’s DNA Synthesis Science group held a  JGI Engagement: Accessing Functional Genomics Capabilities Webinar inviting … Zerbe of the University of California, Davis. “The work with JGI was one of the first things we actually started … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Access to Rock Star Scientists
… Through the JGI-UC Merced Genomics Internship, graduate students Candace Cole, Mo Kaze, Akshay … their work. It’s fun to be around people who are generous with their time and like nerding out about the big stuff, …   “This summer internship has broadened my skills and understandings in the field of genomics. This has reinforced …
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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor when it comes to metabolizing … two polysaccharides can yield sugar monomers, it’s only with the aid of specialized bacterial enzymes. Honey bees … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have … Simon Roux , the Viral Genomics Group Lead at the JGI.  To understand the microbiome systems underpinning a broad range … began to offer a window into viral existence. Along with highlighting the viruses in a given sample, …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
… Congratulations to Susannah Tringe , one of eight scientists and … of microbial communities in carbon cycling, in interactions with plants, and as drivers of methane production, nutrient …
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the … 100,000 single root cells and combining the information with previously published datasets. The work was  recently … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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