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A large sequenced mutant library – valuable reverse genetic resource that covers 98% of sorghum genes
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden understanding of the … a DOE Office of Science User Facility, revealed the largest number of TPS genes of any currently sequenced plant, … Heredity . In order to understand the gene expression and function of these TPS genes, Australian researchers …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI … These analyses provide granular insight into microbial functions, traits and competition, illuminating the inner … “ This workshop was really nice because people were given structure, but it was all about sharing ideas. All breakout …
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Special Initiatives & Programs
… Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, … ,  Science Focus Areas  (SFA) opportunities, and the  Office of Science Early Career Research Program .   If … the minimum is 100 kb, and for metabolomics, at least 22 samples are required. If your proposed request falls …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… the slightly murky waters in the tube look like a scoop of stormwater, complete with leaves, debris, and even … throughout the whole cell are actually contained within a structure that has a membrane,” Volland said. “And this is … that it was a bacterium belonging to the genus Thiomargarita ,” Gros noted. “She named it Ca. Thiomargarita …
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Biological Consequences of Ancient Gene Acquisition and Duplication in the Large Genome of Candidatus Solibacter usitatus Ellin6076
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Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … Their partnership is widespread and cosmopolitan: more than 20,000 ascomycete species and hundreds of microalgae are … the door for more incisive investigations into how lichens function. One of their abilities that’s  now getting more …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles in plant health and environmental … they found that microbial community composition and functional potential varied across tree species and sites, … graduate student in Carolin Frank’s lab , worked on an aspect of the paper with her JGI mentor, Robert Bowers . She …
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Boosting Small Molecule Production in Super “Soup”
… still work in cell-free environments? (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have … to keep processes running smoothly. As reported August 26, 2021, in Nature Communications , researchers led by Hal … with engineered yeast cells but then moves out of the cell structure into a cell-free system. The work complements …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth … of Self-Catalytic Introns across Earth’s Microbiomes Sonia Vargas and mentors Tomas Tyml and Frederik Schulz, Eukaryotes … Theo Loreaux and mentors Simon Roux and Frederik Schulz, Structure Prediction to Annotate Novel Viruses: the Case of …
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Rearrangement of a Large Novel Pseudomonas aeruginosa Gene Island in Strains Isolated from a Patient Developing Ventilator-Associated Pneumonia
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Horizontal gene transfer of the Mer operon is associated with large effects on the transcriptome and increased tolerance to mercury in nitrogen-fixing bacteria
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