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JGI@25: Roots of a Mutualist Relationship
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … (INRAE). Today, there are nearly 200 mycorrhizal fungal genomes publicly available on the fungal portal MycoCosm, … Genome Inside: THE Bioenergy Tree …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… A two-day kick-off meeting held at Lawrence Berkeley National Laboratory … are excited to continue our fruitful collaboration in the microbiome space that has resulted in many impactful papers … follow-up meetings, agreements on exchange of materials and samples as well as research visits are organized. Selected …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, microorganisms, and environmental samples using targeted and untargeted approaches. The … a limit to identify molecules exchanged between plants and microbiomes during interactions? Is it reliable performing …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have … has partnered with researchers around the world to map out genomes of rumen microbes. In 2018, through a JGI Community … provide colleagues at the Salk Institute with genomic DNA samples from Ruminococcus flavefaciens (XPD3002). With that …
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Building Wet and Dry Lab Skills
… Summer 2025 marked the second year of Alabama A&M University students coming to the DOE Joint Genome Institute for research and … Brachypodium distachyon plant root exudates on the plant microbiome. This year, however, there was a new aspect to …
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An Earth Month Look at Sustainability Efforts at the JGI
… Sustainable Berkeley Lab maintains a  calendar of Earth Month … the JGI committed to using Stirling freezers to store samples, which use less than half as much energy as other … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… Newly developed chemiluminescent biosensors shed light on how bacteria function and … di-GMP (Guanine Monophosphate) is found in nearly all types of bacteria and interacts with cell signaling networks that … all plants, many bacterial cultures, and environmental samples auto-fluoresce, making fluorescent biosensors …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was … human chromosomes 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed … eukaryotic organisms from simple yeasts to large vertebrate genomes.  For the past 13 years, Mr. Schmutz has directed …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a … it can also serve as a stepping stone to studying many genomes simultaneously through multiDAP, which allows …
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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient … -Mike Wilkins, Colorado State University GI users and microbiome researchers Mike Wilkins and his graduate student …
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Eelgrass Proves to Be Much Younger Than We Thought
… less than previously believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in Japan before spreading around … assumed, due to the wide and varied geographic footprint of the plant, that eelgrass began colonizing the oceans  …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately … genome discoveries. Unlocking the intricate details of life’s genetic blueprint has long been a significant … ecological Harvard Forest project, large datasets from soil microbiome studies collected across various terrains, and …
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