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JGI@25: Studying Sorghum’s Survival Skills
… that showcase our collaborations and capabilities to enable great science that will help solve energy and … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have … diverse lines of sorghum to understand what genes exist across the species. Earlier pan-genomes for other plants, …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… the earth, but most species do not grow easily in the lab. To access the genomes of uncultured  microbes , scientists … capability that is desirable in the microbiome field due to its high recovery of single-cell genomes. This is key to … together, they found most bacterial genomes from water and soil communities were at least 80% complete when studied …
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Building Sphagnum Genomic Resources
… (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system focused on … impact on global carbon cycling and climate is estimated to be larger than any other single plant genus. Peatlands … estimate that they hold about 25 percent of the world’s soil carbon. In high latitudes, sphagnum can also act as a …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… ditched their flagella and other traits when migrating back to the ocean. The Science Scientists have discovered … unique array of chemicals not typically found in oceans or soils.  A recent study published in  The ISME Journal     … could have the ability to manipulate plant growth.   Across the phylum, diverse  Chloroflexota show the ability …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the Stanford Human Genome … novo sequencing of eukaryotic organisms from simple yeasts to large vertebrate genomes.  For the past 13 years, Mr. … JGI Plant Flagship Genomes and DOE relevant cellulosic feedstocks. He provides scientific project management for the …
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Hiroshi Otani
… facilitate discovery of new secondary metabolites. Prior to joining the JGI, he studied transcriptional regulation, … in understanding how, when and why microbes decide to produce which metabolites. … BS, Engineering, Tokyo Institute of Technology Master's, Biotechnology, …
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Graduate Students Get Thesis Research Opportunity at the JGI
… (SCGSR) program awards graduate students the opportunity to pursue part of their thesis research at one of the DOE national laboratories or national user facilities. As a result of the … challenges central to Office of Science mission areas across the 6 Office of Science research programs. Among the …
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Mining Metagenomes for Cas Proteins
… Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by the U.S. Department of Energy (DOE) Joint … the Innovative Genomics Institute. The Impact The ability to accurately edit genomes (that is, repair gene mutations, … delete or add genes in a precise fashion) has applications across many areas. In particular, gene editing is being used …
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Busting the Unbreakable Lignin
… components   The Science There are three main ingredients to tackle when it comes to breaking down a plant for energy: … use of cellulose and hemicellulose is well-established: Across all life forms and with little exception, organisms … wasn’t quite accurate, and maybe anaerobic fungi living in soils or the guts of livestock were more capable than …
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Eelgrass Proves to Be Much Younger Than We Thought
… when and how eelgrass adapted and evolved throughout its history. Their research, published in  August 2023 in  Nature Plants , was able to assess absolute time estimates for major colonization … started roughly 250,000 years ago, when eelgrass traveled across the ocean current from Japan to colonize the southern …
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Emiley Eloe-Fadrosh
… Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial ecology and … datasets from host-associated and environmental samples to identify and characterize genomic information from uncultivated microbes and viruses. Prior to joining the JGI, she was a Bioinformatics Program Fellow …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Proposals aim to sequence and annotate genomes from Antarctica to Africa to global oceans. Through the Community Science … Their presence reduces the need to add fertilizers to the soil. diCenzo’s proposal is also notable as he had an … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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