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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but most … method called Primary Template-Directed Amplification (PTA) yields a much higher completion, above 80% in most cases. … cell breaks apart and its DNA is copied millions of times using a method named Multiple Displacement Amplification to …
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JGI@25: The Little Alga That Could
… to those who study it) a powerful reference organism for studying photosynthesis and cell motility. It’s also a … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … Her lab has sequenced four additional green algal genomes using Chlamy as a reference for functional annotation, …
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Data Ecosystem
… biology. The collaborations present exciting possibilities for scientific exploration, granting access to diverse … way. We also work with our partners to ensure platforms are future-ready for advancements enabled by artificial intelligence and … to both expertise and infrastructure to facilitate these efforts. Particular areas of emphasis will be the development …
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Four principles to establish a universal virus taxonomy
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Coupled laboratory and field investigations resolve microbial interactions that underpin persistence in hydraulically fractured shales
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A Natural Mechanism Can Turbocharge Viral Evolution
… dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” morphology, this means using proteins on its tail fibers to latch onto a specific … Berkeley National Laboratory (Berkeley Lab), has looked for DGRs in a broad range of publicly available datasets. …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… 25-plus years since the JGI’s inception, making it possible for researchers to get a close look at more ecosystems and … from all of this information. The JGI aims to create pipelines, tools and other standardized data resources that … whose signal would have been filtered out as noise using more traditional methods. Thus far 25 terabases of …
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Extensive remodeling of a cyanobacterial photosynthetic apparatus in far-red light
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Novel bacterial clade reveals origin of form I Rubisco
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Marine Microbe Contains Multitudes
… help regulate the global carbon cycle — fixing, transforming, and respiring carbon. Understanding the metabolisms that SAR324 and other microbes use could inform scientists’ understanding of carbon fluxes in the … Science Program . The metagenomes were also processed using the JGI-developed software suite, BBTools , and …
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… FICUS collaborative proposal call . Letters of Intent for the joint call are due March 7, 2024. The FICUS call … Neutron Scattering (BioSANS) instrument at the Center for Structural Molecular Biology (CSMB) at Oak Ridge … Introduction to the Facilities Integrating Collaborations for User Science (FICUS) Call Karolina Michalska , Advanced …
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Len Pennacchio
… his Ph.D in 1998 from the Department of Genetics at Stanford University where he uncovered the genetic cause of a rare form of human epilepsy and subsequently generated one of the first mouse models for this common neurological disorder. In 1999, he was named …
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