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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… than 20 UC Merced students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, … Programs Deputy Axel Visel teamed with University of California (UC), Merced assistant professor Suzanne Sindi from … around the world. That said, we recognize that workforce in genomics, including JGI, is not representative of the …
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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked … has begun to the June dedication event of the Integrative Genomics Building—the new home of the JGI and KBase in the …
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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Ray Turner Completes Last Tour of Lab Duty at JGI
… For the last 15 years, Ray Turner has been one constant for … as a typical monthly JGI All-Hands Meeting, after a couple of perfunctory items, the agenda went off the rails – … co-localization of JGI and KBase at the Integrative Genomics Building (IGB). Said Michael Brandt of Ray, “You …
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When “The Blob” Made It Hotter Under the Water
… Data from marine heatwave event may foreshadow climate change impact on marine microbial communities. The Science A team of researchers tracked the impact of a large-scale heatwave … from the atmosphere and keeps it in the deep ocean. With genomic samples collected before, during and after The Blob, …
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Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation
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Igor Grigoriev
… at Lawrence Berkeley National Laboratory, and an Adjunct Professor of Plant and Microbial Biology at University of California, Berkeley. He contributed to the Human Genome Project … protists to plants. In 2009, he launched the JGI Fungal Genomics program which resulted in over 2500 fungal genomes …
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Effects of Polar Light Cycle on Microbial Food Web
… Populations of Antarctic lake microbial communities change with the … occupy more space on Earth than any other ecosystem. Therefore, understanding the microbial activity that dominates … collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published in  …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… early Earth conditions. The Science Through a combination of sequencing tools and techniques applied to samples … microbial mats at Yellowstone offer researchers an analog for studying early Earth conditions. Additionally, … archaeal lineages, the team relied on a combination of phylogenomic analyses, transcriptomics for microbial genomic …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version … of 250 plant genomes and has been under active development for over 5 years, provides users with the genome browsers, … powerful and flexible tools available for building high performance user interfaces and backend data systems. Trying …
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