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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and … different organizations is discoverable and accessible. Linking the resources of powerful institutions like the JGI, … (ESNet), the JGI has unique access to both expertise and infrastructure to facilitate these efforts. Particular areas …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… around the country recognize that crop varieties grow best in certain regions. Most plant species have adapted to their … to customize the crop for additional end products. The genetic diversity within this set of plants, each with a … we need to make connections between the plant’s traits and genetic diversity,” said John Lovell, an evolutionary …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have … and a specific microbial host to replicate. Sequencing genetic material directly from samples sidesteps these … key aspect of viruses in the environment — their sheer genetic diversity. As pioneers of this field, the JGI has …
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his doctoral research in synthetic … BS in Biochemistry and Cell Biology, University of California, San Diego PhD in Molecular Biology, University of California, San Diego … DNA cycling across a bacterial population." Nature genetics 49, no. 8 (2017): 1282-1285. Luke, Chung Sze, …
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Ian Blaby
… Since 2019 Dr. Blaby heads the Biodesign Platform at the Joint Genome Institute, where he leads three groups focused on HTP DNA … B.Sc. (HONS) – University of Wales, Cardiff, Genetics Ph.D. – University of Cambridge., Microbial … Ian Blaby on Google Scholar Grosjean et al ., A hemoprotein with a zinc-mirror heme site ties heme availability to …
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Tanja Woyke Elected to American Academy of Microbiology
… of Microbiology (AAM) ! She is among the 68 new Fellows in the Class of 2020, selected from 118 nominees. The … developing and harnessing single-cell methods to access the genetic material of uncultivated microbes and link their … and leading to the discovery of features such as a new genetic code. More recently reported in Nature , she led a …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for data contextualization The Science Since its launch 25 years ago, the  Genomes OnLine Database … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have … 1 billion years of evolution in Kingdom Fungi — from phylogenetic relationships to evolution of genomic mechanisms — … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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The Big Deal About Short Plants
… Despite their diminutive stature, “short plants” such as mosses could be uniquely powerful in helping scientists link plant genetic sequences to what they do. But sequencing the genome …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do anything, they must find a host, and not just any host will do. … in all kinds of ecosystems. However, matching these viral genetic sequences to their hosts is crucial to understanding …
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes … including gathering a more complete view of a population’s genetic makeup and identifying viruses interacting with … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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A Complex Confection Decoded: Sugarcane Reference Genome
… genome and now crop researchers can work toward advancing sugarcane biotechnology. The Science Considered the … in  Nature by an international consortium. With the genetic code of sugarcane, researchers were able to map the … reference sugarcane  genome , the JGI provides foundational genetic information that crop breeders can use to improve …
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