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Gaia: An AI-enabled genomic context–aware platform for protein sequence annotation
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Katherine Louie
… efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … 1000s of metabolite standards, and development of high-throughput untargeted analysis pipelines.  Beyond profiling … and custom software for integrating metabolomics with genomic data (MAGI) for functional annotation and …
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Ian Blaby
… analysis for synthetic biology and functional genomics. Prior to joining the JGI, he was a group lead at … National Laboratory where he focused on functional genomics of phototrophs. Through this and post-doctoral positions at University of … B.Sc. (HONS) – University of Wales, Cardiff, Genetics Ph.D. – University of …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… As part of the JGI’s 25th anniversary celebration, the 2022 Annual … of these talks below, starting with Ari Patrinos. The Genomics Arms Race Ari Patrinos , Former Director of DOE’s … of the Human Genome Project , Patrinos walked the audience through the initial conversations between Los Alamos …
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Neha Varghese
… key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user science and projects through implementation of advanced analysis pipelines and …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a … the microbes involved in successfully biodegrading PCE.  Through the JGI’s  Community Science Program , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  …
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Refining the Process of Identifying Algae Biotechnology Candidates
… well ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly simple: place these … the most biomass to date of any such strain, identified through a screening and characterization pipeline. The … which genes expression patterns. The analysis led to the identification of several transcription factor regulating …
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Genome Sequence of Thermofilum pendens Reveals an Exceptional Loss of Biosynthetic Pathways without Genome Reduction▿ †
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Genome Calligrapher: A Web Tool for Refactoring Bacterial Genome Sequences for de Novo DNA Synthesis
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining lab protocols at the bench to … Imstepf一were selected to continue their research projects through the DOE RENEW grant initiative when school starts in … Jasmyn Pangilinan, Kurt LaButti Project:  Prediction and Identification of Mitochondrial Plasmids from DNA Sequence …
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Complete Genome Sequence for Asinibacterium sp. Strain OR53 and Draft Genome Sequence for Asinibacterium sp. Strain OR43, Two Bacteria Tolerant to Uranium
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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell work — have quickly accelerated understanding of giant viruses. The Science In the last thirty years, in … discovery is reconstructing metagenome-assembled genomes through metagenomic binning. So far, this has been the most …
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