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Cultivating Symbiotic Antarctic Microbes
… cultures reveal they are symbionts and not free-living organisms. The Science Researchers employed multiple … The Impact The Antarctic lakes are a “treasure trove” of unknown microbes that play critical roles in … lifestyles found in the Antarctic lakes and offers a genetically-tractable model system that could help …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… P. psychrophila genes drive resilience when salinity fluctuates. The Science The Arctic microalga … ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, thicker ice with … production and natural fertilizers. By understanding the genetic and metabolic pathways involved in stress responses, …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Congratulations to Jane Grimwood, who has been appointed the Loretta Purdy Spencer Chair in Genomics at the … Biotechnology! Loretta Spencer served as a manyterm mayor of Huntsville, Alabama and is known for her contributions to … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 …
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Gene Expression: From On-Off Switch to Dial
… Fine-tuning metabolic gene expression helps identify variants … to expression, scientists can now opt for various shades of grey. The ability to fine-tune the level of gene expression allowed researchers to identify … This work was funded by the Air Force Office of Scientific Research under Award No. …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. The Science Haloarchaea … a haloarchaea “pan-genome.” Described as the total pool of genetic material comprised by all members of a species, the … (project 4031). The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent greenhouse gas, regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … study how methanogenesis takes place in the context of the genetic material of many different organisms in an …
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey at Duke University and … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility … Single-Cell Data Viewer Tool   … Plant Single-Cell Solutions for Energy and the Environment Workshop …
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JGI-KBase Panel at SACNAS
… Nov. 2: Getting Credit for Scientific Contributions of Any Size What is … students (and their mentors) how to begin establishing a professional presence through getting credit for any …
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Integrating Experimentation with Data
…   Registration for this meeting has closed           Registration fees:                 … attendees: $500     Students: $200      Postdocs: $250     Industry: $700    Thanks for joining the Joint Genome Institute (JGI) and the Environmental … The JGI and EMSL are U.S. Department of Energy (DOE) Office of Science national scientific user …
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An Integrated Dataset to Understand Ecosystem Interaction
… yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar trees and their … data set will help identify how different elements of the ecosystem interact and respond to changes in the … Dubbed “the” bioenergy tree, poplars are known for their genetic diversity. They hold economic value as both biofuel …
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base … themselves can also be modified. The best-known example of a modified DNA base is a methylation of the base cytosine … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental … and researchers more about the patterns and functions of environmental microbes. Researchers can use the tool to … are a way to measure the collection of the microbiome’s genetic makeup. Microbes have specific tetranucleotide …
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