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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome … few species like Arabidopsis or rice as homology models for computational function predictions and also due to the … genes. It provides detailed functional annotations, protein homologs, plant family information, and a genome …
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Virus-Microbe Interactions of Mud Island Mangroves
…   Later this year, Ian Rambo, a graduate student in Brett … the opportunity to pursue part of their thesis research at one of the DOE national laboratories or national user … am planning to enter the Boston biotech startup scene as a computational biologist. My primary future goal is to form a …
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Disclaimer
NOTICE Information from this server resides on a computer system funded by the U.S. Department of Energy. Anyone using this system consents to monitoring of this use by …
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Biotech Partners Summer Intern Co-Authors NAR Paper
Kaushal Sharma, one of five Antioch High School rising juniors … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates …
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PlantSEED enables automated annotation and reconstruction of plant primary metabolism with improved compartmentalization and comparative consistency
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The gold-standard genome of Aspergillus niger NRRL 3 enables a detailed view of the diversity of sugar catabolism in fungi
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Genomic and functional analyses of fungal and bacterial consortia that enable lignocellulose breakdown in goat gut microbiomes
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Two new high-resolution crystal structures of carboxysome pentamer proteins reveal high structural conservation of CcmL orthologs among distantly related cyanobacterial species
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Scaling Up Existing Skill Sets
… of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI researchers for … before. Seeing the breadth of interesting work being done at the JGI has really motivated me to think outside of … my JGI internship was the learning experience I got in computational research. Overcoming a huge learning curve to …
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I-Min (Amy) Chen
Dr. I-Min A. Chen received her Ph.D. in Computer Science. Her research … data modeling, and biological data management. She was one of the co-authors and key developers of the … at Berkeley Lab. Dr. Chen is currently the Microbiome Computational Resource Lead at the JGI, responsible for the … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
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What Happens Underground Influences Global Nutrient Cycles
DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS … a joint research call. Submitted proposals addressed one of the following focus topic areas: Biofuels and … calls, users can combine EMSL’s unique imaging, omics and computational resources with JGI’s cutting-edge genomics, …
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Common Ancestry and Novel Genetic Traits of Francisella novicida-Like Isolates from North America and Australia as Revealed by Comparative Genomic Analyses
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