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… Interactions Within Ecosystems Latest portfolio of approved proposals highlight biodiversity and how ecosystems are adapting to stresses. A total of 17 proposals have been approved through the annual … evolved from a white paper approved through JGI’s CSP New Investigator call to a full-scale submission. She aims …

… 2023 marked a decade since the inception of the flagship internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), Merced. What started with 2 interns in … group at Oak Ridge National Laboratory, he has started a new position as the Senior Manager, Machine Learning at …

… insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … into multiple interconnected layers. The architecture of these algorithms, inspired by communication networks … chromosomal sequences in mixed-genome samples) with a new tool called MetaGNN (Prashant Pandey of CRD). The …

… A new view into a symbiosis could offer benefits to address … change: pulling atmospheric carbon into soil and boosting biofuel feedstocks with less fertilizer. For millions of … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …

… begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, … the microbes within the soil. To get a clearer picture of how burned ecosystems return to health, researchers have … from Colorado State University, the US Forest Service, New Mexico State University, the Environmental Molecular …

… with the theme “Science is Society,” hosts sessions in New Orleans and online. Register for the meeting here. Here are some sessions of interest (all times in PST unless otherwise noted): … December 7   9:15am PT (online) Town Hall on the role of user facilities in accelerating research and tips for …

… JGI is in the process of shifting its operations from Walnut Creek to the heart of the Berkeley Lab campus. By Friday, October 18, the … installed at the  Integrative Genomics Building , JGI’s newly-built home located in the heart of the Berkeley Lab … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …

… to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … Note that beyond quantity, input quality (i.e., presence of “intact” high-molecular weight DNA) is an important … are metagenomes sequenced? A:  For the next call ( CSP New Investigator ), up to 4 long-reads (PacBio) metagenomes …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … to the sequence’s availability via Phytozome. In 2015,  a new and revised version brought the soybean sequence up to …

… Novel study looks at microbiomes in aerial surfaces of plants and their roles in plant health and environmental … The phyllosphere, which is known as the aerial surface of plants, is a comparatively understudied area of forest … the JGI here . Bennett is applying the same experiment to a new environment. She is currently working on her thesis to …

… Twice a year, the DOE Office of Science Graduate Student Research (SCGSR) program awards … projects after the JGI and KBase have settled into their new shared home, the Integrative Genomics Building at … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …