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Informatics Advisory Committee
… The IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI Director. The IAC is …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … in a wide range of research fields. A public repository of 52,515 microbial draft genomes generated from environmental … to build a model from our database of mappings between biochemical reactions and annotations. We look at what was …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for data contextualization The … sequencing projects carried out at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into carbon storage   The … mosses.  New research identifies sex chromosomes in the plant and illuminates the significant role sex plays in how … a genus of just under 400 mosses that can carry up to 25 times their dry weight in water, makes up the …
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Streamlining Regulon Identification in Bacteria
… with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory … transcription-sequencing (RIViT-seq) to facilitate the characterization of transcriptional regulation as well as … efficacy of RIViT-seq, researchers recently characterized 12 sigma factors and were able to identify the associated …
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Axel Visel
… Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. Visel received his … methods for elucidating the gene regulatory landscape of vertebrate genomes, which led to the discovery of …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles in plant health and environmental … summer project in the JGI-UC Merced Internship Program. In 2023, Shayna Bennett, a UC Merced graduate student in … ) conducted by the U.S. Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers … research programs for developing methods for converting plant biomass into sustainable fuels for cars and jets. By … near-complete genomes of P. hallii var. hallii (99.2% complete) and P. hallii var. filipes (94.8% complete) and …
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Natural Prodcast Episode 9: Roger Linington
… DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger … Yeah, that’s right. We were postdocs together in the mid 2000s, I guess. You were working for Brad Moore. I was … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …
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UC Merced Interns Reflect on Their JGI Summer Projects
… Over the course of eight weeks this past summer, 10 students from UC Merced … on research projects that contribute to the larger mission of the U.S. Department of Energy. Students also worked with … summer. The JGI-UC Merced internship program was founded in 2014 with the goal of inspiring students to embark on a …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… for the global research community. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released … Serve the Changing Planet (download a copy at jointgeno.me/2024StrategicPlan .) This plan aligns the DOE Office of Science user facility with broader national …
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A Step Toward Controlling Soybean Rust
… causes Asian Soybean Rust (ASR) and is the major pathogen of soybean. Left uncontrolled, soybean rust could reduce … as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio , Sebastien … soybean rust disease. Soybean itself is a  JGI Flagship plant genome , and JGI  published its genome sequence in …
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