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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC variations in … ways to protect poplar and other crops being considered for bioenergy feedstock development. Summary With the aim of … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and … relevant to living on a changing planet. Transcript for Audio Two special days occur in April: the 50th … from Ed Hall, an ecologist at Colorado State University in Fort Collins. He’s part of a JGI-supported project studying …
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that … a 2012 Community Science Program proposal. Joseph Spatafora of Oregon State University led the effort to sequence …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome Institute. His team … software, compute, and AI for large-scale genomics and lab informatics. Prior to joining JGI in late 2025, he … Liu, O., Akiva, E., Eyles, T. H., Galm, U., Ganesh, S., Hendrix, S. …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of … in perspective, the genus Aspergillus has been evolving for 82 million years, making it nearly 30 times older than … are now becoming training data for machine learning models that can predict biological capabilities directly …
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a broad range of … and trainees who use JGI resources and expertise. These collaborations have yielded numerous, high-quality outputs, … Each portal lists a contact, or you can reach out via the form on our website.   …
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Nikos Kyrpides
… Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became … of Illinois at Urbana-Champaign and at Argonne National Laboratory. Dr. Kyrpides’ research focus on Microbiome …
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Disclaimer
… NOTICE Information from this server resides on a computer system funded by the U.S. Department of Energy. Anyone using this system consents to … With respect to documents available from this server, neither the United States Government nor the University of California nor any of their employees, makes any warranty, …
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JGI Scientists Pen Genome Watch Articles
… Tanja Woyke and other JGI researchers made their debut writing for the Nature Reviews Microbiology column last year — and … romp through the  evolution and domestication of yeast , a model eukaryote. The wide array of topics comes from the … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Four Researchers Join JGI User Executive Committee
… Four researchers have been elected to the User Executive Committee of … State University, Jonathan Eisen of the University of California, Davis, and Michael Köpke of Lanzatech are the latest … genomics, metabolic engineering, synthetic biology of non-model microbes, and biomanufacturing of sustainable fuels, …
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JGI at the AGU Fall Meeting
… This year the AGU Fall Meeting, with the theme “Science is … hosts sessions in New Orleans and online. Register for the meeting here. Here are some sessions of interest … State University (short talk): “Predators of the Deep: virus-host dynamics in the terrestrial subsurface” 2pm …
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Forest Fungi, Seagrass, and a New View of Symbiosis
… Three stories of JGI-supported research, connected to nutrient cycles. Francis Martin and Lucas Auer discuss their work on communities of forest floor fungi. Allison Joy looks into seagrass meadows' …
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