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Jane Grimwood Named HudsonAlpha Genomics Chair
… large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 … viridis ). The team of researchers at the Danforth Plant Science Center (Danforth Center), HudsonAlpha and the JGI … As well as the seminal Human Genome Project DOE Chromosome publications: The DNA sequence and biology of human …
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Gut Fungi: Unexpected Source of Novel Chemicals
… expensive feat thought to be too costly for them. The Science Anaerobic fungi, which die in the presence of … can breathe oxygen — just like we do. Oxygen is a rich source of energy, and because anaerobic fungi can’t harness … natural products . Yet, combing through the genomes of four anaerobic fungal species has revealed, for the first …
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Fungus Fuels Tree Growth
… growth of poplar, a potential biofuel feedstock.     The Science The fungus  Mortierella elongata enjoys a dual … The cuttings included genotypes from the DOE BioEnergy Science Center (BESC), predecessor of  DOE’s Center for … as secreted proteins. However,  M. elongata  seems to encourage the plant to have leakier cell walls and weaker …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… celebrates research enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to … But not all scientists have the expertise and resources to do DNA design and synthesis work. This is where … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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JGI Announces 2026 New Investigator Portfolio
… accepted proposals.  The New Investigator call , part of our  Community Science Program , allows us to work and share our tools with … these researchers will harness capabilities including metagenomics, metatranscriptomics and genome assembly to …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … the JGI has pioneered, including single-cell genomics and metagenomics. The GEBA initiative has also utilized a very … DSMZ overall, resulting not only in a valuable sequence resource to complement DSMZ’s vast strain resource, but also …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , researchers … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of the  Marchantia pangenome, scientists developed a resource that associates plant’s genetic variants with specific …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… techniques including single-cell genomics and metagenomics. They cited her “landmark” 2013 Nature paper , … Woyke currently serves as the interim deputy for JGI User Programs. Earlier this year, she was elected to the American … as Adjunct Scientist at the Bigelow Laboratory for Ocean Sciences and as Associate Adjunct Professor at the …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of the … management best practices that have advanced the microbial sciences. The Prize also recognizes innovative and impactful analysis of microbiome data that has changed our understanding of the microbiome and the microbial …
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Training the Next Generation of Talent
… of Energy Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, Keedrian Olmstead was back on campus … a part of the students’ thesis,” she says. “Second, we want our students to gain the opportunity to see what research is … that would allow users to simultaneously run several programs for RNA-Seq assembly to determine which is best for …
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JGI@25: Studying Sorghum’s Survival Skills
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have …
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