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… large datasets with the assembler program MetaHipMer2. Oak Ridge National Lab is home to two supercomputers — … Frontier — that process terabytes of data with MetaHipMer2. And the National Energy Research Scientific Computing … Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running …

… and the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … For that reason, its genome was sequenced by the JGI in 2009 and it is considered to be a Flagship Plant. By … the crop and its microbiome. For three consecutive years (2016-2018), researchers conducted large-scale experiments in …

In these springs, temperatures can reach as high as 80°C (~190°F), yet microbes thrive here. The communities in this … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … User Facility, is supported under Contract No. DE-AC02-05CH11231. This work was supported in part by a Natural …

… sequencing, they were able to identify the target genes of 11 sigma factors in Streptomyces coelicolor . The Impact As … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … efficacy of RIViT-seq, researchers recently characterized 12 sigma factors and were able to identify the associated …

… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … User Facility, is supported under Contract No. DE-AC02-05CH11231. This study was funded by the Max Planck Society. …

… dead cells recorded. Samples were taken again at two, six, 12 and 24 hours. By the 24-hour mark, these algae showed … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Allen Frontiers Group, the National Science Foundation (MCB-1244557 to J.A.D.) and the Lawrence Berkeley National …

… an array of defense mechanisms. The Impact There are over 10,400 species of ferns alive today. Boasting adaptations in … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … (Berkeley Lab) took on the Open Green Genome Initiative in 2018 as part of its Community Science Program. The OGG has …

… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … enzymes across 90 species. They queried the genomes of 15 species from each of six kingdoms: eubacteria, archaea, … has allowed AT enzymes to evolve in complex ways.  Finally, to take a closer look at the functional redundancy …

… effort, an international consortium recommended specific guidelines and best practices for characterizing … uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … Additionally, CheckV was able to identify just over 17,000 contiguous sequences (contigs) of proviruses flanked …

… zealexins. Even though scientists have identified at least 15 zealexins, they suspect there are even more to find. … as  Sorghum bicolor — a  candidate bioenergy feedstock and  JGI Flagship Plant — could produce at least 15 zealexins. … Institute Community Science Program (JGI-CSP) grant (CSP2568 to P.Z., ES and AH), and by a fellowships provided by …