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Rex Malmstrom
… and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever … of Technology he developed a high throughput approach for isolating individual bacterial cells and amplifying … His group also handles the Stable Isotope Probing (SIP) Metagenomics pipeline  that reveals in situ functional …
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Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a … hundreds of microalgae are able to partner to form lichens. Studying the symbiosis by investigating a lichen’s genomes … can rapidly create genetic variation in its progeny. The study’s transcriptomic data also identified many genes …
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Mapping Heat Resistance in Yeasts
… A new approach for improving functional annotation in fungal genomes. The Science In a proof-of-concept study, researchers demonstrated that a new genetic mapping … species that have been separated for millions of years. The study highlights the genes that could be used to make other …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… which could then be converted into sustainable biofuels . For its importance to the DOE mission, switchgrass is among … as multiple copies across the chromosomes. In a follow-up study , researchers focused on two types of naturally … JGI Annual Meeting, David Lowry talked about a multi-year study his student conducted involving fungal rust pathogen …
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Fishing for Novel Cellulose Degraders
… The Science One of the most vital pieces of equipment for fly fishing is a boxful of lures. Designed with feathers … their functional roles in their community. This study shows how the function-driven, single-cell screen can … microbes. The new technique is another tool for microbial ecologists to learn more about the diversity …
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The Structure of CcmP, a Tandem Bacterial Microcompartment Domain Protein from the β-Carboxysome, Forms a Subcompartment Within a Microcompartment
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Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… For the first time in several years, the DOE Joint Genome … Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant … Emerald Nash : What I’m working on here is an experimental study of root colonization by resident phages of a plant …
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A One-Stop Shop for Analyzing Algal Genomes
… Understanding the genetic underpinnings responsible for these traits takes us closer to harnessing algae for … also analyze gene expression from published experiments; study DNA methylation, which gives clues to how an organism … Biology Knowledgebase (KBase) also allows researchers to study how metabolites flow through and transform in algae. …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… National Laboratory (Berkeley Lab) and the Laboratory for Research in Complex Systems (LRC) in Menlo Park, Calif. … at the Université des Antilles and a co-first author on the study, performed the 16S rRNA gene sequencing to identify … continue research on the project. At the JGI, Volland began studying Ca. T. magnifica in Tanja Woyke’s Single Cells …
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Detection of short-term cropping system-induced changes to soil bacterial communities differs among four molecular characterization methods
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Contrasting Community Assembly Forces Drive Microbial Structural and Potential Functional Responses to Precipitation in an Incipient Soil System
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