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Microbial Genomics & Metagenomics (MGM) Workshop
… Registration has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on Microbial Genomics and Metagenomics. Details: mgm.jgi.doe.gov   This highly hands-on workshop is designed to …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … 150 archaeal viruses had been previously identified. The JGI researchers surveyed publicly available data in the …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… from Wisconsin’s Lake Mendota. In this episode: a look at the supercomputing that stitches together large datasets with the assembler … Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running …
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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription factors with their target genes. The … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … regulatory network in bacteria, enabling the discovery of regulatory cascades as well as crosstalk between …
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2025 Progress Report
… JGI researchers demonstrate how their laboratory and data science efforts support users, advance foundational science and enable biotechnology discoveries. (Pictured from left to right: Peng Wang, Sravanthi …
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JGI-UC Merced Interns Share Their 2021 Experiences
… from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research projects, hone science presentation … year and continue working on their research project! The JGI-UC Merced internship program was founded in 2014 with … Polymorphisms Created by Transposable Elements …
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Mapping Heat Resistance in Yeasts
… A new approach for improving functional annotation in fungal genomes. The Science In a proof-of-concept … Genomics Project led by the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility of Lawrence … grew well; the survivors had their DNA sequenced at the JGI as part of a 2014 Community Science Program project. The …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… Researchers looked across many organisms to see that aminotransferase enzymes have evolved mix-and-match … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … for computational analysis of the AT enzyme family, the JGI provided DNA synthesis capabilities to enable functional …
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The Power of One, Amplified
… metagenomics studies. The Science Researchers demonstrated the value of conducting large-scale single cell … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … sampled hot spring, a dataset of nearly 500 single cells covered the diversity of most taxa within the sample. …
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an interactive and … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Research (BER) program to enable scientific discovery in support of the DOE mission. Fermentative …
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Busting the Unbreakable Lignin
… plant for energy: Cellulose, hemicellulose and lignin, cumulatively called lignocellulose, are the primary components of … Research Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential genes responsible for lignin deconstruction. (The JGI also conducted RNA sequencing and alignment to the …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… A genetic architecture that is characteristic of the sex chromosomes of mammals is, … reproduce can help guide breeding efforts. For example, discovering genetic markers of sex enables scientists to … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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