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Dealing with Drought: Uncovering Sorghum’s Secrets
… The field experiment is led by a consortium involving researchers from the University of California (UC), … and the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … crops. For that reason, its genome was sequenced by the JGI in 2009 and it is considered to be a Flagship Plant. By …
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Supercharging SIP in the Fungal Hyphosphere
… novel interactions between bacteria and fungi The Science Researchers have successfully automated aspects of a … Applying this method to the study of a particular fungi, researchers identified novel interactions between bacteria … HT-SIP is a capability available to request through  the JGI proposal calls . …
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Trent Northen
… the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic methods available to JGI users.  Dr. Northen’s research is focused on using … Northen is the Metabolomics Science Program Head at the JGI. Click to learn more about the program's areas of focus, …
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Green Algae Reveal One mRNA Encodes Many Proteins
… Proceedings of the National Academy of Sciences , a team of researchers has found numerous examples of polycistronic … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … (FICUS) collaborative science initiative between the JGI and EMSL.  …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), Merced. What started … opportunities to speak on a national level. A crowd of excited attendees consisting of current interns, mentors, … scientist and program mentor, discussed how “advocating and listening to the interns and learning their perspectives and …
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Changes to virus taxonomy, the international code of virus classification and nomenclature, and the ICTV statutes ratified by the International Committee on Taxonomy of Viruses (2025)
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Leo Baumgart
… binding sites and which has been applied to a wide range of JGI user science projects spanning bacteria, fungi, and … et al. "Supporting FAIR Scientific Workflows with the JGI Analysis Workflow Service (JAWS)." In 2025 IEEE …
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Disclaimer
… statement of authorship are reproduced on all copies. The JGI is not responsible for the contents of any off-site …
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Rex Malmstrom
… of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … to culture these microbes in the lab. After joining the JGI, he formed the Microscale Applications group to operate … a similar single-cell genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … heavily invested in being the bridge to help scientists and researchers achieve their analysis goals. Offering this tool establishes the JGI as a leader in single-cell genomic amplification at a …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… the complex organic matrix of the forest floor, a team of researchers have found that there is a striking division of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Berkeley National Laboratory, to create the database. JGI provided metagenome and metatranscriptome sequences, as …
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Tracing the Evolution of Shiitake Mushrooms
… structures, as well as atmospheric carbon dioxide.  Summary Researchers sequenced 11 samples from Asia–Australasia and … samples was a global collaboration that brought together 39 researchers from eight different countries. Genome and … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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