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High-quality permanent draft genome sequence of Ensifer medicae strain WSM244, a microsymbiont isolated from Medicago polymorpha growing in alkaline soil
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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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Streamlining Regulon Identification in Bacteria
… genes of 11 sigma factors in Streptomyces coelicolor . The Impact As an integrative genome science user facility, … (Berkeley Lab). Transcription factors control when and how genes are turned on or off, so transcriptional … including activators, repressors and sigma factors. However, currently the process for identifying the …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… , the JGI’s web portal for fungal genome data.   The Impact This dataset gives researchers a new foundation for studying how fungi produce and manage energy at the cellular level. … trees built from mitochondrial and nuclear genomes showed strong agreement across the kingdom, confirming that …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… that builds off their early collaborations that could help crop breeders and researchers predict how crops and model organisms may evolve.  Determining the …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… a structure that helps correct deleterious mutations. The Impact Shrub willow and its close relative  Populus … ZW rather than ZZ encodes for females. To better understand how sex determination works in shrub willow, researchers … response regulator that was expanded in a palindrome and shown to be undergoing gene conversion in willow. This gene …
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Gene Expression: From On-Off Switch to Dial
… the level of gene expression by the gradations. The Impact Metabolic engineering could lead to sustainable … were previously missed in knock-out screens. These results show that this singular library synthesized by JGI was …
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Uncovering Novel Genomes from Earth’s Microbiomes
… small fraction of Earth’s microbial diversity. Because most microbes cannot be cultivated under laboratory conditions, … and environments, including natural and agricultural soils, human- and animal-host associated, and ocean and … that time. “Looking across the tree of life, it’s striking how many uncultivated lineages are only represented by …
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Len Pennacchio
… regulatory sequences in the human genome. Understanding how variation in regulatory sequences influences human …
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Learning to Look
… inoviruses are in every major microbial habitat—including soil, water, and humans—around the world. By the numbers, … replication and integration. The researchers also learned how an inovirus’ strategy of integrating itself within a … said Krupovic. “We can now start inquiring into their impact on microbial communities in the environment and also …
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Nigel Mouncey
… fungicides, platform chemicals, cosmetics and new crop traits. Dr. Mouncey has successfully built integrated … Lab expert interview, Director Nigel Mouncey describes how the JGI supports the world's scientists, providing …
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JGI Announces 2023 Community Science Program Awardees
… Lab). “We’re very excited to start working with this years’ crop of CSP recipients, over half of which are first-time … and bioproducts. Learn more about our proposals, including how to apply, here on our website. The approved proposals …
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