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David Goodstein
… at Cornell, IBM, Utah State University, and semiconductor equipment manufacturer KLA-Tencor before joining the JGI in 2002. Initially focused on building tools to facilitate expert curation of human gene models in … metazoans and plants. Working with a talented team of scientists and software engineers, Dr. Goodstein currently leads …
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Extracting the Secrets of Secondary Metabolites
… for growth yet essential for survival, may now be easier to characterize following a proof-of-concept study in which … is a technique researchers can use to integrate large genetic payloads directly into diverse microbes. Combining … to identify which pathway corresponds to which metabolite. Finding a vehicle by which to introduce CRISPR into the …
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A Plant Root Atlas for Tracking Developmental Trajectories
… team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey at Duke University and Uwe Ohler … User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). “This represents the largest … are hallmarks of different cell types.” His contribution to the paper also aligns with his DOE  Early Career Research …
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A Mentor’s Perspective on Training the Next Generation
Over the years, hundreds of interns have come to the JGI from all parts of the globe to gain lab experience and contribute to ongoing projects. … and how great it was to have an experienced career scientist as a mentor.  …
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Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species
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Busting the Unbreakable Lignin
… components   The Science There are three main ingredients to tackle when it comes to breaking down a plant for energy: … yield fuels, and removing lignin in order to do so is a resource-intensive process. Now, a new study shows how … modification happening in the absence of oxygen. These findings offer the first real irrefutable proof that lignin …
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Emiley Eloe-Fadrosh
Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial ecology and … datasets from host-associated and environmental samples to identify and characterize genomic information from … Microbiome Data Collaborative (NMDC). … Emiley Eloe-Fadrosh is the Metagenome Science Program Head at the JGI. Click to …
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Party in the Rhizosphere
… roots, creating a lively zone called the rhizosphere. In this episode, biologist Jennifer Pett-Ridge of Lawrence Livermore National Laboratory has your backstage pass. …
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Fungal Friends or Foes in Plant Roots
… compared the genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated … boost yields for both food and for candidate bioenergy feedstock crops. Summary A plant is like an office building, its … Lawrence Berkeley National Laboratory (Berkeley Lab). Their findings were described in a recent Nature Communications …
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Computationally Classifying Fungal Lifestyles
… learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … (Berkeley Lab), has generated a more accurate phylogenetic tree tracking the evolution of  Dothideomycetes fungi. The  work appeared in the June issue of  Studies in Mycology . This work was enabled in …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint … Why is a resource like this important to the field of plant genetics/genomics? Avinash: Having a better handle on the … that to include six more species, so in total, we are looking at 18 different species, which included over 2000 …
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Hiroshi Otani
… in 2016, Dr. Otani has been studying secondary metabolism in microbes, particularly actinomycetes. His research … facilitate discovery of new secondary metabolites. Prior to joining the JGI, he studied transcriptional regulation, … in understanding how, when and why microbes decide to produce which metabolites. … BS, Engineering, Tokyo …
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