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… The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial … with results published in the  November 2022 issue of Microbiome . High-throughput stable isotope probing (SIP) … widespread type of mycorrhizal fungi, live within a plant’s root system. They form mutually beneficial relationships …

… tool development/data analysis for synthetic biology and functional genomics. Prior to joining the JGI, he was a … lead at Brookhaven National Laboratory where he focused on functional genomics of phototrophs. Through this and post-doctoral positions at … B.Sc. (HONS) – University of Wales, Cardiff, Genetics Ph.D. – University of …

… JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative … 15.  Q: What is the user annotation process (are these functional annotations) and how are these integrated within … function in fungal genomes? A: There is a broad range of functional annotation across the fungal kingdom. Some …

… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is … the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab … Area are also co-located in the IGB. Vision The vision of the U.S. Department of Energy (DOE) Joint Genome …

… By characterizing the structure and function of a methylthio-alkane reductase system, researchers could … that was previously only understood at a genetic level. Functional and structural experiments showed how the enzyme … metagenome mining, all the way from sequencing to functional characterization, and a project like this — an …

… three new members earlier this month – Sneha Couvilion of Pacific Northwest National Laboratory, Chris Schadt of … is a staff scientist at PNNL and thrust lead on PNNL’s Soil Microbiome SFA. She serves as Secretary within the Microbial … Wilbanks has served on review panels for the JGI’s Functional Genomics CSP and the JGI-EMSL FICUS programs and …

… A genetic architecture that is characteristic of the sex chromosomes of mammals is, for the first time, seen in a plant. The … mutations. The Impact Shrub willow and its close relative  Populus trichocarpa,  or the poplar tree, are potential … This work was supported by the NSF Dimensions of Biodiversity Program (DEB-1542509 to S.D., DEB-1542486 to LBS, …

… Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology teaching labs. The purpose of the program is to: train students and professors in laboratory techniques and data analyses compile … Beyond providing a scalable solution for production of high-quality fungal reference genomes, this program is an …