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Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization
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Legacy Effects of Cropping System and Precipitation Influence the Core Camelina sativa Microbiome
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Supercharging SIP in the Fungal Hyphosphere
High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi … and the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley … samples simultaneously. Soil microorganisms play a critical role in sequestering carbon and mitigating greenhouse gas …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
DNA Synthesis Science group held a  JGI Engagement: Accessing Functional Genomics Capabilities Webinar inviting … of the proposals. Upon approval from JGI reviewers, the DOE project managers review the proposals. The proposer of …
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Ben Bowen
Specializing in mass spectrometry-centered projects, Dr. Bowen’s work … impactful scientific discoveries, supporting the DOE’s Biological and Environmental Research user community … K., Yi, Z., & others (2010). Proteomics analysis of human skeletal muscle reveals novel abnormalities in obesity …
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Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T)
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JGI Hosts GPU Hackathon in May
WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing unit (GPU)-based … is one of the largest producers of environmental genomics data and has a strong reputation in the community,” said JGI …
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Genome‐wide association studies and expression‐based quantitative trait loci analyses reveal roles of HCT2 in caffeoylquinic acid biosynthesis and its regulation by defense‐responsive transcription factors in Populus
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Fungus Fuels Tree Growth
Researchers start pinning down how a fungal symbiont spurs growth of poplar, a … of particular interest to the U.S. Department of Energy (DOE). By better understanding how poplar responds to its … fine-tune their engineering efforts of both plants and root microbiomes to grow energy crops more efficiently. Summary …
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Meanders as a scaling motif for understanding of floodplain soil microbiome and biogeochemical potential at the watershed scale
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Metagenomes and Metagenome-Assembled Genomes from Microbiomes Metabolizing Thin Stillage from an Ethanol Biorefinery
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Heterospecific Neighbor Plants Impact Root Microbiome Diversity and Molecular Function of Root Fungi
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