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Applying Viral Genomics Expertise to Understanding the Human Virome
… prediction for metagenome-derived viruses of archaea and bacteria ( PLoS Biol , 2023). These tools have significantly …
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Bacterial Genome Annotation
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A bacterial toolkit for plants
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A Complex Confection Decoded: Sugarcane Reference Genome
… partly enabled by the JGI’s Community Science Program; in 2018, a monoploid reference sequence of sugarcane …
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Boosting Small Molecule Production in Super “Soup”
… complements efforts to further develop sustainable alternative approaches for manufacturing bioproducts and biofuels … senior authors. “But this has been done most commonly in bacterial-based systems, and so one of the things that I … and away from ethanol, an undesired product of the yeast’s native glucose metabolism Alper’s graduate student Xiunan Yi …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… the world. One expanded group is of viruses associated with bacteria; until now, most of the known RNA viruses have been … associated with eukaryotes. Along with the expansion of bacteria-associated RNA viruses is the finding that “a few bacteria use CRISPR to defend against RNA,” Roux noted, …
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Improved Draft Genome Sequence of Microbacterium sp. Strain LKL04, a Bacterial Endophyte Associated with Switchgrass Plants
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Proposal of Patescibacterium danicum gen. Nov., sp. nov. in the ubiquitous ultrasmall bacterial phylum Patescibacteriota phyl. Nov
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Aerobic bacterial methane synthesis
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… deeply are metagenomes sequenced? A:  For the next call ( CSP New Investigator ), up to 4 long-reads (PacBio) …
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Boosting Small Molecule Production in Super “Soup”
… and viability constraints. Cell extracts provide an alternative format for chemical synthesis in the absence of cell … complements efforts to further develop sustainable alternative approaches for manufacturing bioproducts and  … senior authors. “But this has been done most commonly in bacterial-based systems, and so one of the things that I …
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Virus Discoveries that Keep Getting Bigger
… , these giant viruses boast larger genomes than many bacteria. Until recently, understanding of giant viruses … previously thought, and potentially even more abundant than bacteria. A fourth option for virus discovery is …
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