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Effects of Polar Light Cycle on Microbial Food Web
… change with the seasons. The Science Light-harvesting bacteria (phototrophs) in Antarctica’s Ace Lake defy the … aligned with light availability. A long-running time-series study offers a first glimpse into a full season’s cycle of … period and sent to JGI for metagenomic sequencing. A study  recently published in  Microbiome shows that the way …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Igor Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … data were generated, bioinformatic tools for binning metagenome data involved with mainly eukaryotic origins were … the much more extensive taxonomic and genetic sampling, our study confirmed the affinity between Olpidium and the …
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Taking Stock of the Known and Unknown Microbial Space
… diversity hotspots Over the past few decades, advancements in sequencing technologies have led to an abundance of … sequence data generated over the past three decades, their study assesses what fraction of the microbial diversity we … genes on nearly 2 million genomes, including isolates, metagenome-assembled genomes (MAGs) with varying quality …
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NeLLi — Symposium on New Lineages of Life
The DOE Joint Genome Institute hosted the hybrid “NeLLi 2023 … in the areas of bioenergy and biomedicine, as well as biotechnology. NeLLi August 24 – 25, 2023 Session Speakers:   … Schulz,  New Lineages of Life Lead Emiley Eloe-Fadrosh, Metagenome Program Tanja Woyke, Microbial Program Robert …
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DOE JGI Interns Share Their Summer Experiences
This summer, the DOE JGI hosted 10 interns who came from a wide range of backgrounds. Many of them spent the summer crunching genomic data at a computer; a few had the opportunity to … (NSF) and supports underrepresented minorities in science, technology, engineering and math (STEM) fields. This summer, …
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New Research Sheds Light on Diversity in the Deep Sea
Microbial communities living near hydrothermal deep-sea vents hold vast potential for … other biomolecules that could potentially be applied to biotechnology and medicine. A more robust understanding of … Laboratory, contributed metagenomic sequencing to the study as well as  genome analysis, providing authors a more …
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Extracting the Secrets of Secondary Metabolites
… for survival, may now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR and CRAGE … make up the foundation for a slew of vital products in biotechnology, medicine, agriculture, and other industries — …
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Help from Citrus’ Bitter, Hardier Cousin
… to disease-resistance that could prove fruitful for saving Citrus from greening disease. You’ve probably never … JGI collaborator, are senior authors of the  recent study published in  The Plant Journal.  this study included the discovery of candidate genes that confer …
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Decoding Yellowstone’s Microbial Mats
… it wouldn’t exist without cyanobacteria; they began oxygenating Earth over two billion years ago. A team of researchers set out to Yellowstone National Park to study how cyanobacteria are living, communally, in microbial mats. Along the way, they’ve …
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Kjiersten Fagnan
Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, … participant, 2021 Member of the Networking and Information Technology Research and Development (NITRD) Program Chair of …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some archaeal hosts and … but these symbiotic interactions are difficult to study in the lab. Metagenomics provides new views of these … the microorganisms had a close relationship. Then, using metagenomes and metatranscriptomes generated by the U.S. …
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Viruses Reprogram Cells into Different Virocells
Microbial cells infected by viruses undergo metabolic reprogramming. The … The Ohio State University and the University of Michigan studying how virus infections cause significant metabolic … an experimental approach with a marine phage-host model to study virus-host-nutrient interactions. In  their study , …
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