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Identifying the Microbial Cleanup Crew at a Superfund Site
… Analysis reveals the microbial community involved in a bioremediation effort. The Science In 1999, … Science User Facility located at Lawrence Berkeley National Laboratory and used to identify the microbes involved in … ) conducted by the U.S. Department of Energy Joint Genome Institute (JGI) ( https://ror.org/04xm1d337 ), a …
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Cultivating Symbiotic Antarctic Microbes
… cultures reveal they are symbionts and not free-living organisms. The Science Researchers employed multiple … microbiology and ‘omics techniques to experimentally determine that Nanohaloarchaeota are symbionts, rather than … archaea first outlined by JGI scientists and their collaborators in 2013. While most DPANN lineages are predicted …
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that … Glycine max on Phytozome …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth … Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant … the leaf through which carbon dioxide enters the leaf for photosynthesis.  ALISON:  Photosynthesis is what allows …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  video below, captions are available) spotlighted the metabolomic analysis capability … through the  Community Science Program (CSP) . This includes mass spectrometry-based measurements of primary and …
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Dan Rokhsar
… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director for Computational Genomics, and led … AB in Physics, Princeton University, NJ MS in Theoretical Physics, Cornell University, NY PhD in … Award, National Cotton Council 2009 Friday Evening Lecturer, Marine Biological Laboratory 2000 John Simon …
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DAP-seq Drives Robust Mapping of Gene Regulation
… view of plant evolution and adaptation.    Understanding how genes are regulated is like deciphering the complex wiring behind a city’s power grid. Just as … Science User Facility located at Lawrence Berkeley National Laboratory. “These proteins’ binding preferences are very, …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics … B.S in Biomedical Engineering, Johns Hopkins University; Ph.D. in Bioengineering, … 1. Swift CL, Louie KB, Bowen BP, Olson HM, Purvine SO, Salamov A, et al. Anaerobic gut fungi are an …
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From Textbook to Real World Applications
… and Tim Kostolansky of De La Salle High School expressed an interest in learning more about the principles of synthetic biology, Robert …
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JGI & KBase at PAG XXVII
… XXVII Conference (PAG) takes place January 12-16, 2019, in San Diego, Calif. Representatives from the DOE Joint Genome Institute (JGI) and the  DOE Systems Biology … chat with representatives from KBase and the JGI about collaborative science opportunities. Learn how to apply for a …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper , … the process. They noted this may be the first publicly available, river-focused microbial resource that provides … awards DEB1840243, EAR1836768 and DEB1457794. Funding support also was provided from Colorado State …
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