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Understanding Wildfire Recovery, Starting in Soil
… a wildfire. The Science After a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi … this kind of analysis is the ability to see how microbial communities interact; beyond bacteria, these samples … FTICR-MS analyses were performed under the Facilities Integrating Collaborations for User Science (FICUS) …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different lifestyles. The Science The … (HOT), they collected samples of the ocean’s microbial communities periodically at different depths. In order to …
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a virus protein tied to carbon cycling.  The Science Through a … which can have a significant impact on the microbial communities within soil. Using metagenomics, scientists can … the FICUS program to JEM and used resources at the DOE Joint Genome Institute (JGI) and the Environmental Molecular …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately … large amounts of genomic data from a variety of microbial communities, the model learns to recognize patterns, … datasets include an extensive 25-year study of microbial communities in freshwater environments, the long-term …
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In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes
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Cultivating Symbiotic Antarctic Microbes
… cultures reveal they are symbionts and not free-living organisms. The Science Researchers employed multiple … microbiology and ‘omics techniques to experimentally determine that Nanohaloarchaeota are symbionts, rather than … JGI is sequencing large numbers of microbes and microbial communities that contribute to carbon cycling, and is …
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Open Frameworks Training the Next Generation of Scientists
… Educational training technologies provide opportunities for students and … existing infrastructures and technologies, enabling these communities to become trainers for budding scientists and … SB was supported by the National Science Foundation Integrative Organismal Systems - Plant Biotic Interactions …
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest time, the cotton fields look like popcorn is literally growing on plants, with fluffy white bolls bursting out of the … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Comparative genomics reveals insights into characterization and distribution of quorum sensing-related genes in Shewanella algae from marine environment and clinical sources
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High‐throughput identification of novel heat tolerance genes via genome‐wide pooled mutant screens in the model green alga Chlamydomonas reinhardtii
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JGI User Executive Committee Expands
… Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility … of Delaware. His lab is interested in how microbial communities can efficiently degrade complex polymers that …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at …
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