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Effects of Polar Light Cycle on Microbial Food Web
Ocean long ago, this shift to archaea being the main producer doesn’t occur here. Understanding this fundamental … Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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The Power of One, Amplified
The Science Researchers demonstrated the value of conducting large-scale single cell genomics by collecting nearly … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … was performed by Danielle Goudeau and Rex Malmstrom of the JGI’s Microscale Applications group . Cells were randomly …
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An Automated Tool for Assessing Virus Data Quality
… uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … The microbes that play key roles in cycling nutrients such as carbon, nitrogen and sulfur are themselves regulated … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Eelgrass Proves to Be Much Younger Than We Thought
… also shows the younger meadows in the Atlantic ocean are much less diverse than their Pacific Ocean ancestors — … was previously inaccessible due to Arctic ice.  However, much of eelgrass’s colonization in the Atlantic ocean … The work (proposal 10.46936/10.25585/60000773) conducted by the US Department of Energy Joint Genome Institute …
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Making a Lichen Together
… branches of fungi); another is a photosynthetic microbe, tucked in the fungus’ tissue. If you’re a Marvel Comics fan, … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and his team at the JGI contributed to annotation of the genomes, available …
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Benjamin Cole
… of the Index of Cell Identity as an R package … Education … Selected Publications … Software …
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A Grass Model to Help Improve Giant Miscanthus
… improving their abilities to adapt to extreme environments such as poor soils and drought. The reference genome for M. … programs of related candidate bioenergy feedstock crops such as sugarcane and sorghum. The M. sinensis genome … Biosciences Institute, the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered … and as a feedstock for biomass-based biofuel production. As seen with many commonly cultivated commercial crops such as wheat, peanut, oat, banana, potato, etc., switchgrass …
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W. Berkeley Kauffman
… utilizing a variety of technologies to improve the JGI’s capabilities in the areas of metagenomics, …
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Neha Varghese
… and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user …
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Overview of the Genomes OnLine Database (GOLD)
TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata …
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IMG/VR
JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG database …
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