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The More the Merrier: Making the Case for Plant Pan-genomes
… plants multiply. Over time, plants lose many genes after such events, returning their genomes to a diploid state while … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … relative of the candidate bioenergy crop switchgrass and a JGI Flagship Plant. All three  Brachypodium  grasses have …
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Rex Malmstrom
… of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … to culture these microbes in the lab. After joining the JGI, he formed the Microscale Applications group to operate … a similar single-cell genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His …
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Tracking the Origins of Methane-Producing Microbes
… Identify Novel Archaeal Methane Metabolism. Methane-producing archaea are estimated to produce 500 million tons of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the … archaea. The Quake lab had previously collaborated with the JGI on a proposal using this approach through the Emerging …
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The Expanding Universe of Methane Metabolisms in Archaea
… than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key role in determining the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly … of Life Symposium in April, which immediately precedes the JGI’s 14th Annual Genomics of Energy & Environment Meeting. …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… By characterizing the structure and function of a methylthio-alkane reductase system, … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … the Genomes to Structure and Function focus area of the JGI’s DNA Synthesis Science Program help advance DOE …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… gas, regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of methanogenesis, with metagenomic support from the JGI. First they were able to identify the potential for …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… The battle waged below the Earth’s surface is reconstructed by combining a study of microbial communities … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … 150 archaeal viruses had been previously identified. The JGI researchers surveyed publicly available data in the …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of … everywhere, comparatively little is known about viruses, much less those considered large and giant. In a recent … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Triggering Morel Fruiting
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility,  reported on … acquired from an external source.  The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide … to acquire carbon from lignocellulosic-abundant matters such as plant litter and to incorporate the assimilated …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Huberiarchaeum would help fill in metabolic weaknesses. In such cases, these DPANN hitchhikers likely form a mutualistic … The work ( proposal doi: 10.46936/10.25585/60000800 ) conducted by the U.S. Department of Energy Joint Genome …
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When “The Blob” Made It Hotter Under the Water
… rise, so do instances of extreme weather events such as hurricanes and droughts. Another one began in late … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … communities up and down the water column. They recently shared their findings in Communications Biology . They …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… mSystems paper , a team at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … their ratios of small DNA sequence fragments called tetranucleotides, are a way to measure the collection of the … microbiome’s genetic makeup. Microbes have specific tetranucleotide frequencies, and an area’s environment hosts …
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