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Counting dots or counting reads? Complementary approaches to estimate virus-to-microbe ratios
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… and environmental challenges. Switchgrass is a native, shrubby grass that can grow year-over-year on marginal soil and … switchgrass gardens to track crop productivity across 1,100 miles and eight states. In 2021, using switchgrass … have also harnessed the switchgrass gardens for other projects. At the 2021 JGI Annual Meeting, David Lowry talked …
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JGI@25: Stories from Intern Alumni
… wet lab experiments, to computational modeling and virtual projects, hear intern alumni Candace Cole, Alessandro …
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XA21-mediated resistance to Xanthomonas oryzae pv. oryzae is dose dependent
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Progress Reports: 2002–2020
… downloadable pdfs of previous Progress Reports from the Joint Genome Institute.  … FY10 Progress Report …
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Access to Rock Star Scientists
… Interactions “The summer internship has further confirmed by desire to pursue a STEM career, specifically in a … lab. My favorite thing is the mentorship provided by JGI. Everyone at JGI is so nice and helpful.”     Mo … by passionate scientists working on interdisciplinary projects. I feel inspired to pursue a career in STEM. …
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JGI on the 2020 Highly Cited Researchers List
… Researchers at the JGI! They are among those recognized by Clarivate Analytics as “true pioneers in their fields … Jeremy Schmutz Susannah Tringe Tanja Woyke Below are a few projects each of these researchers were involved in, … a JGI-led team that  applied machine learning to classify 101 representative genomes of Dothideomycetes, the largest …
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Annual Meeting 2027
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Plant Microbial Interactions Group
… in how plants self-organize, influence, and are influenced by microbial partners. We use a variety of genomics-powered … viruses can be found in a myriad of bacterial strains, whereby they can modulate host metabolism, gene expression and … model system. We seek to expand beyond this model system by identifying phages and characterizing this multipartite …
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Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case
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Exploring Polymorphisms Created by Transposable Elements
… My project at the Joint Genome Institute (JGI) was to measure the …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… that keep microbes — and the enzymes that would be produced by microorganisms — out,” said JGI user/collaborator Michelle O’Malley, a chemical and … into biochemical production.    Over time, as these projects have delivered results, they have also snowballed …
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