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A One-Stop Shop for Analyzing Algal Genomes
Understanding the genetic underpinnings responsible for these traits takes us closer to harnessing algae for bioenergy and the greater bioeconomy. By bringing … system for microbial and metagenome datasets, MycoCosm for comparative analysis of fungal genomes, and Phytozome for …
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Four amino acids define the CO2 binding pocket of enoyl-CoA carboxylases/reductases
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An Automated Tool for Assessing Virus Data Quality
… virus sequences vary widely. In a previous effort, an international consortium recommended specific guidelines and best practices for characterizing uncultivated viruses. Following up on … (pronounced “Check-Vee”) to help researchers assess and improve the quality of metagenome-assembled viral genomes . …
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Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050T (DSM 19838T) and Gramella portivictoriae UST040801-001T (DSM 23547T), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et
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Building Sphagnum Genomic Resources
… model system focused on carbon cycling studies, rather than for food or fuel applications. The Impact Sphagnum’s impact … permafrost from the warming regional temperatures. For this reason, the U.S. Department of Energy is overseeing … David Weston of Oak Ridge National Laboratory make the case for  sphagnum as “an unparalleled model system for …
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When “The Blob” Made It Hotter Under the Water
Data from marine heatwave event may foreshadow climate change impact on marine microbial … it in the deep ocean. With genomic samples collected before, during and after The Blob, researchers developed a … events. More time-series studies could help researchers improve predictive models on how climate change may impact …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and around Earth … the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome Institute, a … data portal, which will include a database for comparative analysis of all the Human viruses. Kyrpides …
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JGI@25: Studying Sorghum’s Survival Skills
… challenges. Sorghum stands out as a candidate feedstock for biofuels thanks to its drought and flood hardiness. Even … feature in common with certain other cereal crops: It performs C4 photosynthesis, which is the fastest way for plants … genomes. Deep sequencing and genetic linkage analysis improve the genome’s accuracy, and increase its length by …
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Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… to advance foundational science, creating opportunities for the global research community. The U.S. Department of … DOE Office of Science user facility with broader national efforts to promote and stimulate a bioeconomy, where … Berkeley Lab, to understand how biomaterials are made and improve them. Biosurveillance and biopreparedness …
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Tracing the Evolution of Shiitake Mushrooms
… 60 existing sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks … genomes and their evolution could provide strategies for converting plant waste into sugars for  biofuel production. Additionally, these fungi play a …
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Learning to Look
… answer the question, “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters … and a unique chronic infection cycle. “We’re not sure why we systematically manage to miss them; maybe it’s due to … through genetic engineering, inoviruses are used for several biotechnological applications, most notably, …
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