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An Automated Tool for Assessing Virus Data Quality
CheckV can help researchers assess virus sequence fragments and data … recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … virus sequences vary widely. In a previous effort, an international consortium recommended specific …
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Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
PI on this project. “I view the program as an excellent platform to build collaborative research initiatives.” Yasuo … is famous for its work sequencing human and environmental genomes. But we now have these DNA synthesis capabilities … for characterization of new enzymes and use the data we generated to train machine learning models now publicly …
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The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… energy and environmental challenges.   Scanning the California oak woodlands from the air, large swaths of the … to decode the complex Phytophthora ramorum genome. The JGI generated the organism’s DNA code in tandem with a … Science News of the Day: Stokstad E. Genetics. Genomes highlight plant pathogens’ powerful arsenal . …
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JGI announces 2023 CSP Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from potential users who need help translating genomic information into biological function. Through our CSP …
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Axel Visel
… the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and … for elucidating the gene regulatory landscape of vertebrate genomes, which led to the discovery of thousands of genetic … Institutes of Health, American Heart Association, Medical Research Council (UK),  Nature, Cell , Nature Genetics , …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… the DOE Joint Genome Institute (JGI) and University of California (UC), Merced. What started with 2 interns in the … the Lab. “This project represents part of our long term efforts to contribute towards a diverse workforce and … Jorge Arroyo , director of UC Merced’s Undergraduate Research Opportunity Center, echoed similar sentiments for …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… also holds a joint appointment with the University of California, Berkeley. Nowadays, Session is an Assistant … early collaborations that could help crop breeders and researchers predict how crops and model organisms may … developed a method to correctly identify polyploid subgenomes without needing to know the genomes of their …
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The Power of One, Amplified
… approaches including amplicon and metagenomic sequencing. For example, they showed that the composition of the … that were missed within paired metagenome assembled genomes (MAGs), and that dominant populations varied with … identified from microbial and metagenome sequence data sets generated from a handful of hot springs, including Dewar …
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MGM Workshop at Fisabio Summer School 2025
… to students and professionals of biology, biomedical research, the health sciences and related fields who are … and seminars as well as practical hands-on sessions in bioinformatics and biostatistics Several sessions will be devoted to training in the use of the Integrated Microbial Genomes & Microbiomes (IMG/M) system, presented by Natalia …
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Improved chromosome-level genome assembly and annotation of the seagrass, Zostera marina (eelgrass)
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