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Annotation of metagenome short reads using proxygenes
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Transcriptional control of Clostridium autoethanogenum using CRISPRi
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When “The Blob” Made It Hotter Under the Water
… impact on marine microbial communities. The Science A team of researchers tracked the impact of a large-scale heatwave … the atmosphere and keeps it in the deep ocean. With genomic samples collected before, during and after The Blob, … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy sources. More … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and research scientist Frederik Schulz in … single amplified genomes of Margulisbacteria from marine samples. The research teams opted to collaborate on a single …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More recently, these long-reads have been applied … assemblies by JGI and uploaded to IMG? A:  Depending on the project setup, we can include as part of our data analysis …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… di-GMP (Guanine Monophosphate) is found in nearly all types of bacteria and interacts with cell signaling networks that … all plants, many bacterial cultures, and environmental samples auto-fluoresce, making fluorescent biosensors … and the Joint Genome Institute, a DOE Office of Science User Facility, built a chemiluminescent cyclic di-GMP …
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Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… in their chosen field or fields through the publication of multiple highly cited papers during the last decade” by … Tanja Woyke (Biology and Biochemistry)  Here’s a selection of studies these busy bees contributed to:  Giant bacteria … to ground-breaking research following the discovery of bacteria 5,000 times the average size. Woyke’s  Single …
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Probing the active fraction of soil microbiomes using BONCAT-FACS
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Protein structure determination using metagenome sequence data
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Microbial species delineation using whole genome sequences
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SpaRC: scalable sequence clustering using Apache Spark
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