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Nikos Kyrpides
Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development … (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial Genomes and Metagenomes … Nayfach S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . …
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Exploring and Thinking Critically about Scientific Problems with JGI Interns
While summer interns at the JGI from multiple programs had their own goals to achieve, they constantly …
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Natural Prodcast
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Katherine Louie
… manages metabolomics production for community sequencing projects and heads R&D efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass spectrometry-based … stable isotope probing (SIP) to assess metabolite turnover, DNA-SIP for helping identify active micro-organisms within …
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Learning to Look
Waldo will have all of these features. As described July 22, 2019, in  Nature Microbiology , a team led by scientists … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an algorithm that a computer could … which are filamentous viruses with small, single-stranded DNA genomes and a unique chronic infection cycle. “We’re not …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… proposals.  Tips: Contact us with your questions (jgi-jira+pmo[email protected]) Carefully read our proposal call … to reach that maximum with broader questions and broader project scope? A: Focus on strong science and … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Berkeley Lab. In addition to … analysis of the AT enzyme family, the JGI provided DNA synthesis capabilities to enable functional testing of … plant, fungi and animal. This analysis led them to identify 2,938 putative AT  genes. Within the AT genes identified …
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SPRUCE-ing Up Science
When Lawrence embarked on his PhD program at UC Merced in 2013, this field was just beginning to develop and expand … . “There was a lot of freedom to explore,” he recalled. His project involved developing an algorithm and although the … to develop a tool that leveraged machine learning to help users determine which computer program would best serve …
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Matthew Kellom
… interest. Matt also supports various CSP and FICUS user projects for the Metagenome Program. …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
… the specialized software and supercomputers behind this project. But every part of this project depends on lakewater samples — so this episode is a …
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JGI Workshops at PAG
Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With … of plant systems. We will describe how to apply for a project with the JGI Community Science Program and how you …
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Uncovering Novel Genomes from Earth’s Microbiomes
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … acknowledge the significant efforts to collect and extract DNA from these samples, many of which come from unique, … hope JGI and other institutions continue to do this kind of projects.” The work also used resources of the  National …
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