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… shotgun sequencing. The team first tested the approach on bacterial laboratory models to set a reference for its … a new genus level member of the novel candidate phylum Goldbacteria. They’ve proposed the name  Candidatus … by the NIGMS Biotechnology Training Program (NIH 5 T32 GM008349) at the University of Wisconsin – Madison. This work …

… include six more species, so in total, we are looking at 18 different species, which included over 2000 RNA Seq … community is of utmost importance. The scope of handling 18 different species is beyond the capacity of a single lab. … Avinash: It has been publicly available since 2018. There were more than 15 citations even before this was …

… ran the gamut of sequencing technologies, from making a bacterial artificial chromosome library to long-read …

… By studying the structure and function of a cyanobacterial protein, researchers have new insights into how … are easy to point out. Plants, algae and cyanobacteria create the air we breathe and the fuel for food … iron and fine-tunes energy production, allowing cyanobacteria to quickly adapt to their environment. “The protein …

… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct … community genomes and expressed gene transcripts (metagenomes, metatranscriptomes), as well as the genomes of … Lab), through the JGI Community Science Program . The metagenomes were also processed using the JGI-developed …

… related species – sorghum. The Impact Sugarcane produces 80 percent of the world’s sugar, which is of interest to … To create this reference sequence, the team relied on bacterial artificial chromosomes (BACs), vectors that can … as a reference. The final sugarcane sequence generated is 382 Mb; 25,316 protein-coding gene models were predicted with …

… DW, Doering DT, Mouncey NJ. Cytochromes P450 involved in bacterial RiPP biosyntheses. J Ind Microbiol Biotechnol. … of the genus Streptomyces. Sci Rep. 2022 Nov 7;12(1):18909. Otani H, Mouncey NJ. RIViT-seq enables systematic … natural products. Nat Rev Microbiol. 2021 Nov;19(11):683. Mouncey NJ, Otani H, Udwary D, Yoshikuni Y. New voyages …

… of how large-scale single cell genomics complements metagenomics studies. The Science Researchers demonstrated the … Parks). In these springs, temperatures can reach as high as 80°C (~190°F), yet microbes thrive here. The communities in … more moderate ecosystems. A few years ago, a candidate bacterial lineage was identified from microbial and …

… Metagenome-assembled archaeal genomes provide new insights … oxidation metabolisms. They also identified a set of 38 marker genes that serve as a core set of genes present in … “Distribution of predominant high-temperature archaeal and bacterial lineages in Yellowstone National Park,” as well as …

… in perspective, the genus Aspergillus has been evolving for 82 million years, making it nearly 30 times older than the … entirely new capabilities through partnerships with bacterial symbionts, and how others revolutionized their … toward 10,000 annotated genomes, this infrastructure advantage becomes even more critical. With roughly half of all …

… Scientist at Berkeley Lab. Since joining Berkeley Lab in 2008, Dr. Northen has had leadership roles within large … Schadt, C., Martin, S., Carrell, A. et al. An integrated metagenomic, metabolomic and transcriptomic survey of Populus … McGivern BB et al. Decrypting bacterial polyphenol metabolism in an anoxic wetland soil. …

… Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Making Big Data Metagenomic Clustering Scalable …