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… shotgun sequencing. The team first tested the approach on bacterial laboratory models to set a reference for its … a new genus level member of the novel candidate phylum Goldbacteria. They’ve proposed the name  Candidatus … and Environmental Research under contract DE-FC02-07ER64494. EG is supported by the NIGMS Biotechnology Training …

… targets for plant improvement. Surprisingly, about 16 to 56 percent of plant genes are poorly characterized, meaning … additional biological information. As I’ve said earlier, 16 to 56 percent of plant genes are poorly characterized. So …

… ran the gamut of sequencing technologies, from making a bacterial artificial chromosome library to long-read … and the University of Turku to S.O.; and NSF DEB1541506 to J.G.B. and S.F.M. The work conducted by the U.S. …

… By studying the structure and function of a cyanobacterial protein, researchers have new insights into how … are easy to point out. Plants, algae and cyanobacteria create the air we breathe and the fuel for food … iron and fine-tunes energy production, allowing cyanobacteria to quickly adapt to their environment. “The protein …

… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct … and colleagues set sail on research cruises in 2015 and 2016. At Station ALOHA , site of the 30-years-long Hawaii Ocean … community genomes and expressed gene transcripts (metagenomes, metatranscriptomes), as well as the genomes of …

… To create this reference sequence, the team relied on bacterial artificial chromosomes (BACs), vectors that can … The final sugarcane sequence generated is 382 Mb; 25,316 protein-coding gene models were predicted with more than …

… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in … DW, Doering DT, Mouncey NJ. Cytochromes P450 involved in bacterial RiPP biosyntheses. J Ind Microbiol Biotechnol. … natural products. Nat Rev Microbiol. 2021 Nov;19(11):683. Mouncey NJ, Otani H, Udwary D, Yoshikuni Y. New voyages …

… of how large-scale single cell genomics complements metagenomics studies. The Science Researchers demonstrated the … more moderate ecosystems. A few years ago, a candidate bacterial lineage was identified from microbial and … was then used to produce a paired amplicon dataset (a.k.a. 16S rRNA gene sequencing), a shotgun metagenome, and a single …

… Metagenome-assembled archaeal genomes provide new insights … Office of Science User Facility, for publicly available metagenome data provided by the other study co-authors, and … “Distribution of predominant high-temperature archaeal and bacterial lineages in Yellowstone National Park,” as well as …

… these organisms have diversified into an estimated 2–6 million species — dwarfing the diversity of plants. To put … entirely new capabilities through partnerships with bacterial symbionts, and how others revolutionized their … toward 10,000 annotated genomes, this infrastructure advantage becomes even more critical. With roughly half of all …

… Schadt, C., Martin, S., Carrell, A. et al. An integrated metagenomic, metabolomic and transcriptomic survey of Populus … Sci Data. 11, 339. https://doi.org/10.1038/s41597-024-03069-7  p.eadg7888. DOI: 10.1126/sciadv.adg7888 Treen D, et … McGivern BB et al. Decrypting bacterial polyphenol metabolism in an anoxic wetland soil. …

… Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Making Big Data Metagenomic Clustering Scalable …