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Computationally Classifying Fungal Lifestyles
… nutrients from decaying organic matter (saprobes), and many plant pathogens known to infect most major food crops and … clusters showed a >95 % accuracy in correctly predicting plant pathogens (blue) vs saprobes (green). (From Haridas S …
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Trent Northen
… environments to understand how webs of microbes cycle carbon and sustain biomes via the development and application … in Chemical Engineering, University of California Santa Barbara Ph.D. in Chemistry and Biochemistry, Arizona State … 2.0 reveals that nitrogen form and starvation modulate root exudation. Science Advances, 2024 10(1), Schadt, C., …
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Gut Fungi: Unexpected Source of Novel Chemicals
Fungi from herbivore poop make surprisingly complex compounds — an … fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest their last leafy meal. In … compounds may also be involved in how the fungi metabolize plant biomass, which could inform how scientists can more …
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Learning to Look
… sequence is most likely not an inovirus. But if these nearby genes are both short and novel, then that’s a very good … and his colleagues found that the inoviruses were being targeted by their hosts’ own CRISPR-Cas systems, termed …
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Honey Bee Gut Microbiota Divvy Up Dinner
Honey bees are invaluable pollinators — cupids of the plant world facilitating the remixing of genes in the next … bees eat plant nectar and pollen. Nectar is an easily absorbable solution of sugars. But pollen contains plant cell … honey bee gut. Early on, monosaccharide sugars can be absorbed, but the complex polysaccharides — the pectin and …
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Party in the Rhizosphere
… are the VIPs. They’re feasting on the compounds that plants secrete through their roots, creating a lively zone called the rhizosphere. In …
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JGIota: Looking Back at Methane-Making Microbes
… from gut microbes — the bacteria and archaea breaking down plant matter. So since 2010, the JGI has supported …
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A Step Toward Controlling Soybean Rust
… soybean rust disease. Soybean itself is a  JGI Flagship plant genome , and JGI  published its genome sequence in …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… and also because 8X switchgrass is generally thought to harbor less genetic and phenotypic (visible traits) diversity. … could be generating these observed patterns. As many other plant species have natural cytotype variation, we also hoped … hundreds of naturally-occurring genotypes (in this case, a plant’s complete genetic makeup) and 10 common gardens. We …
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Evolution of a Fungal Gene Expression Regulator
… of the base cytosine at the 5th position on its carbon ring, or 5mC. In many organisms, 5mC is an important … than 500 species of fungi. The Impact Interactions between plants and fungi run the gamut from mutually beneficial to … that can move to another location in the genome. Many plant pathogens such as the fungi that cause poplar leaf …
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Methylotrophy in the Mire: direct and indirect routes for methane production in thawing permafrost
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Nigel Mouncey
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