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Three pairs of fungal Trametes strains isolated from distinct geographic origins show conserved genomic features and adaptive response to plant biomass
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Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7
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Scaling High‐Resolution Soil Organic Matter Composition to Improve Predictions of Potential Soil Respiration Across the Continental United States
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Ian Blaby
… with a zinc-mirror heme site ties heme availability to carbon metabolism in cyanobacteria Nature Communications 15(1) … 2024 Simirenko et al ., gRNA-SeqRET: a universal tool for targeted and genome-scale gRNA design and sequence … Exploiting algal NADPH oxidase for biophotovoltaic energy. Plant biotechnology journal . 14: 1, 22-28. 2016 Blaby et. …
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Training the Next Generation of Talent
… Ben Cole on a project involving bacteria in Arabidopsis plant roots. At the same time, Lawrence worked with Nicole Johnson … developing an algorithm for RNA-Seq assembly. RNA-Seq is a technique for profiling the small fraction of a genome that …
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Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations
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Forming Scientific Connections and Building Community
… learned so much in terms of scientific approach and as a plant biologist, I have learned so many techniques and theory. Being able to work with state of the … for the selection of genes essential for specialized carbon utilization ” Jesica Calderon : “Being a JGI intern …
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JGI & KBase at PAG XXVII
… The Plant and Animal Genome XXVII Conference (PAG) takes place … and how you can use the KBase system to accelerate your plant genomics research. Click here to download a list of … relevant to JGI science at PAG XXVII. On January 14, JGI Plant Program head Jeremy Schmutz and  KBase Co-PI Bob …
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DOE Metrics
… developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on … improving the interpretation of microbial, metagenomic, or plant genomes. [Download PDF] End-of-year Goal – Develop one …
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Igor Grigoriev
… Berkeley National Laboratory, and an Adjunct Professor of Plant and Microbial Biology at University of California, … analysis of diverse eukaryotic genomes, from protists to plants. In 2009, he launched the JGI Fungal Genomics program … Nat Biotechnol. 2011; 29: 922-927. Eastwood DC et al. The plant cell wall-decomposing machinery underlies the …
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JGI@25: Studying Sorghum’s Survival Skills
… little water, full sunlight and hot temperatures, sorghum plants can photosynthesize and thrive — some varieties grow … which is the fastest way for plants to convert carbon dioxide and water into sugars and oxygen. Both … looks at how each variety stores sugars and sequesters carbon. 2015: Epigenetic Control of Drought Tolerance in …
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Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica
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