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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
A special issue of Synthetic Biology celebrates research enabled by the JGI … more than 10 papers, including two Nature Plants publications, in five years, have come out of the … Machine learning-based prediction of activity and substrate specificity for OleA enzymes in the thiolase superfamily — …
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Daniel Udwary
… group. His research interests lie in use and development of bioinformatics tools for elucidation of biosynthetic gene clusters in bacteria and fungi. Prior … (1996) … List available on Google Scholar … Education … Publications …
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Hiroshi Otani
… technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he … which metabolites. … BS, Engineering, Tokyo Institute of Technology Master's, Biotechnology, University of Tokyo … Mol. Microbiol. 87, 1223-1236. PubMed … Education … Publications …
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I-Min (Amy) Chen
… data modeling, and biological data management. She was one of the co-authors and key developers of the Object-Protocol Model (OPM) data management tools for … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
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Benjamin Cole
… (scRNA-seq, Spatial Transcriptomics). … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic Institute (B.S., 2006) … List of pubs available on NCBI … Implementation of the Index of Cell Identity as an R package … Education … Selected Publications … Software …
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Zhong Wang
… and enabling data-driven science. This is a group of computational biologists, bioinformaticians, computer … the Wang group has developed customized data analyses and software to enable “grand-scale” scientific projects. These … metagenome binning software … Education … Selected Publications … Software …
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Emiley Eloe-Fadrosh
Her current research focuses on leveraging thousands of metagenomic datasets from host-associated and … Fellow at the Gordon and Betty Moore Foundation as part of the Marine Microbiology Initiative. She conducted her … Futures … Metagenome Science Program … Education … Selected Publications … Awards and Service …
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Simon Roux
… the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the … of the global RNA virome reveals diverse clades of bacteriophages. Cell 185, 4023–4037. Coclet et al., 2023. Virus … Microbiology Resource Announcements … Education … Selected Publications … Awards and Honors …
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Igor Grigoriev
… at Lawrence Berkeley National Laboratory, and an Adjunct Professor of Plant and Microbial Biology at University of … Gobler CJ et al. Niche of harmful alga  Aureococcus anophagefferens revealed through ecogenomics.  Proc Natl Acad … … Fungal & Algal Science Program … Education … Selected Publications … Awards and Service …
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Jeremy Schmutz
… human chromosomes 5, 16, and 19. Following the completion of the human genome project in 2003, he developed … assembly, and improvement strategies for de novo sequencing of eukaryotic organisms from simple yeasts to large … Award … Plant Science Program … Education … Selected Publications … Awards and Honors …
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Frederik Schulz
Genome Institute in 2016 and is leading the New Lineages of Life Group. His research is focussed on the discovery of novel bacterial, archaeal and eukaryotic microbes and … academic achievements (2008) … Education … Selected Publications … Awards and Service …
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Matt Blow
… function in bacteria. Since 2016, he has been the lead of the User Support Analysis group. The group performs … analysis and develops automated pipelines for analysis of resequencing, transcriptome, epigenome and other … board member for Scientific Reports … Education … Selected Publications … Awards and Service …
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