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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… crop and ornamental seeds sold for the upper Midwest are often very different than those bred for Texas. Identifying … in the gardens. “Tom gave me a truck and I drove all over Texas with a shovel,” recalled study co-author David …
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NeLLi — Symposium on New Lineages of Life
… 2023 Symposium” delving into the most recent expansions of the Tree of Life and latest discoveries toward the evolution of cellular complexity and … microbial lineages, leading to a new appreciation for the extent of diversity. The phylogenetic and functional …
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The Case for Conservation
… genome . Now, high-quality reference genome sequences of the male and female plants, each representing a single … The moss genomes’ metabolic pathways could lead to the discovery of genes that could be used for multiple … On the TV show “Antiques Roadshow,” the guests are often both surprised and pleased to learn the value of their …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who … and characterize viral diversity, understand the role of viruses in natural ecosystems, and functionally explore …
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2022 Progress Report
Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to … Area are also co-located in the IGB. Vision The vision of the U.S. Department of Energy (DOE) Joint Genome …
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Tandem termination signal in plant mRNAs
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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … study’s transcriptomic data also identified many genes potentially important for the symbiosis, including those … program under Award No DE-FC02-02ER63421. The meiosis gene identification was performed in the context of work …
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The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes
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Katherine Louie
… efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … untargeted analysis pipelines.  Beyond profiling over 10k samples/year, Dr. Louie and her team work with … Sci Rep. 2013;3: 1656. … Education … Selected Publications …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how the freshwater ecosystem …
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Rex Malmstrom
Dr. Malmstrom is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements … dissertation in life sciences 2006 … Education … Selected Publications … Awards and Honors …
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific uncultivated microbes … all the other sequences can be even more challenging. To overcome this hurdle, a team led by Bernhard Fuchs and his …
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