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User Support Analysis Group
… for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product types, …
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Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a … of developing alternative fuels from plants is the high cost and resource requirements of processing these … coherent pieces called contigs — into genes and even into genomes — from these environmental samples,” said Matthias …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth … Pathogens Shayna Bennett and mentor Robert Bowers, Mobile Genetic Elements and CRISPR Spacers in the Conifer Needle … new software I’d never been using before. I also wanted to improve my communication skills by being able to talk to …
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Dealing with Drought: Uncovering Sorghum’s Secrets
Over 40 percent of the cereal crop’s genes respond to drought stress. The … uncover the mechanisms behind sorghum’s capacity to produce high yields despite drought conditions. The field experiment … to produce good yields under water limiting conditions. Epigenetic Control of Drought Response in Sorghum (EPICON) is a …
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Single mutation at a highly conserved region of chloramphenicol acetyltransferase enables isobutyl acetate production directly from cellulose by Clostridium thermocellum at elevated temperatures
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Evolutionary instability of CUG-Leu in the genetic code of budding yeasts
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Better Genome Editing for Bioenergy
A team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in … oil production. The Science CRISPR-Cas9 is a powerful, high-throughput gene-editing tool that can help scientists … their tool before felling their research problem: at a genetic level, how does  Y. lipolytica work? The project was …
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Common Ancestry and Novel Genetic Traits of Francisella novicida-Like Isolates from North America and Australia as Revealed by Comparative Genomic Analyses
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Applying Viral Genomics Expertise to Understanding the Human Virome
… viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome … viruses are likely to infect, and (iii) identifying the genetic traits of the viruses to better understand their … and Data Collaboration Center (CODCC), is led by a team of highly experienced investigators from institutions including …
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have revisited a … and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has … “All along the way, it was just like rediscovering genetics, with the evolution of sequencing technologies and …
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Two new high-resolution crystal structures of carboxysome pentamer proteins reveal high structural conservation of CcmL orthologs among distantly related cyanobacterial species
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